| Package Name | Access | Summary | Updated |
|---|---|---|---|
| dinopy | public | DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers). | 2025-08-05 |
| libmems | public | libMems is a freely available software development library to support DNA string matching and comparative genomics. | 2025-08-05 |
| bedops | public | High-performance genomic feature operations. | 2025-08-05 |
| libmuscle | public | libMuscle header files. | 2025-08-05 |
| pplacer | public | Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. | 2025-08-05 |
| libgenome | public | A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats. | 2025-08-05 |
| gocr | public | GOCR is an OCR (Optical Character Recognition) program. | 2025-08-04 |
| sentieon | public | Accelerated performance bioinformatics tools for mapping and variant calling | 2025-08-04 |
| tracy | public | Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files | 2025-08-04 |
| rscape | public | R-scape (RNA Structural Covariation Above Phylogenetic Expectation) looks for evidence of a conserved RNA secondary structure by measuring pairwise covariations observed in an input multiple sequence alignment. | 2025-08-04 |
| sickle-trim | public | Windowed Adaptive Trimming for fastq files using quality | 2025-08-04 |
| unicycler | public | Hybrid assembly pipeline for bacterial genomes | 2025-08-04 |
| yacrd | public | Yet Another Chimeric Read Detector, with long-read mapper result as input. | 2025-08-04 |
| perl-text-balanced | public | Extract delimited text sequences from strings. | 2025-08-04 |
| prophyle | public | ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier. | 2025-08-04 |
| perl-bio-samtools | public | Read SAM/BAM files | 2025-08-01 |
| enabrowsertools | public | enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily. | 2025-08-01 |
| perl-html-tidy | public | (X)HTML validation in a Perl object | 2025-08-01 |
| stereogene | public | StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data | 2025-08-01 |
| ngseqbasic | public | Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command. | 2025-08-01 |
| libsequence | public | A C++ class library for evolutionary genetics. | 2025-08-01 |
| genometools-genometools | public | GenomeTools genome analysis system. | 2025-07-31 |
| changeo | public | A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. | 2025-07-31 |
| ntcard | public | Estimating k-mer coverage histogram of genomics data | 2025-07-31 |
| ghostz | public | GHOSTZ is a highly efficient remote homologue detection tool | 2025-07-31 |
