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biobb_md
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public |
Deprecated Package: biobb_md is no longer maintained and has been superseded by the biobb_gromacs package. Biobb_md is the Biobb module collection to perform molecular dynamics simulations.
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2025-04-22 |
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hicmatrix
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public |
Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks
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2025-04-22 |
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smcounter2
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public |
smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers
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2025-04-22 |
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solexaqa
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public |
Quality statistics and visual representations for second-generation sequencing data
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2025-04-22 |
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shannon
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public |
A program for assembling transcripts from RNA-Seq data.
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2025-04-22 |
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genclust
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public |
A genetic algorithm for clustering gene expression data.
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2025-04-22 |
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pyega3
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public |
EGA python client
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2025-04-22 |
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krakenuniq
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public |
Metagenomics classifier with unique k-mer counting for more specific results
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2025-04-22 |
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python-rnacentral
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public |
This tool exploits the RNAcentral public APIs to automatically retrieve sequences (converted to the FASTA format) and the related metadata, starting with one or a list of RNAcentral IDs
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2025-04-22 |
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tigmint
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public |
Correct misassemblies using linked or long reads
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2025-04-22 |
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bioconductor-elmer
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public |
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
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2025-04-22 |
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bioconductor-elmer.data
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public |
Data for the ELMER package
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2025-04-22 |
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r-seurat-scripts
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public |
A set of wrappers for individual components of the Seurat package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
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2025-04-22 |
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r-workflowscriptscommon
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public |
Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing.
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2025-04-22 |
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scnic
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public |
SCNIC: Sparse Cooccurence Network Investigation for Compositional data
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2025-04-22 |
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selene-sdk
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public |
Framework for developing sequence-level deep learning networks.
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2025-04-22 |
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perl-mac-systemdirectory
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public |
Locate Mac OS X Standard System Directories
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2025-04-22 |
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transgenescan
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public |
Software tool for finding genes in assembled transcripts from metatranscriptomic sequences.
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2025-04-22 |
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perl-specio
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public |
Type constraints and coercions for Perl
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2025-04-22 |
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perl-sub-quote
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public |
Efficient generation of subroutines via string eval
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2025-04-22 |
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perl-module-list
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public |
module `directory' listing
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2025-04-22 |
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perl-experimental
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public |
Experimental features made easy
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2025-04-22 |
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perl-heap
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public |
Perl extensions for keeping data partially sorted
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2025-04-22 |
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fithic
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public |
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays.
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2025-04-22 |
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teloclip
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public |
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
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2025-04-22 |
