| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastq-tools | public | A collection of fastq manipulation scripts written in C for speed. | 2025-08-19 |
| seqkit | public | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation. | 2025-08-19 |
| r-aroma.affymetrix | public | A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006. | 2025-08-19 |
| pbsim | public | No Summary | 2025-08-19 |
| r-phewas | public | Phenome Wide Association Studies (PheWAS) - Functions to perform Phenome Wide Association Studies (PheWAS). These functions include the conversion of ICD9 codes to PheWAS codes (v1.2), statistical analysis, and plotting. | 2025-08-19 |
| tgt | public | TextGridTools -- Read, write, and manipulate Praat TextGrid files | 2025-08-19 |
| perl-lwp-protocol-https | public | Provide https support for LWP::UserAgent. | 2025-08-19 |
| perl-mozilla-ca | public | Mozilla's CA cert bundle in PEM format. | 2025-08-19 |
| perl-text-format | public | Format text. | 2025-08-19 |
| perl-image-info | public | Extract meta information from image files. | 2025-08-19 |
| pyprophet | public | PyProphet: Semi-supervised learning and scoring of OpenSWATH results. | 2025-08-19 |
| r-aroma.core | public | Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'. | 2025-08-19 |
| perl-term-detect-software | public | Detect terminal (emulator) software and its capabilities. | 2025-08-18 |
| hcluster_sg | public | A tool for hierarchically clustering on a sparse graph | 2025-08-18 |
| nanocomp | public | Comparing runs of Oxford Nanopore sequencing data and alignments | 2025-08-18 |
| planemo | public | Command-line utilities to assist in building tools for the Galaxy project (https://galaxyproject.org). | 2025-08-18 |
| intarna | public | Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites | 2025-08-16 |
| mdasim | public | This is MDAsim 2+, a tool to simulate whole genome amplification of a DNA sequence with multiple displacement amplification. A citation for this version will be provided when available. MDAsim 2+ extends MDAsim 1.2, so please also always cite: Tagliavi Z, Draghici S. MDAsim: A multiple displacement amplification simulator. 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2012. pp. 1–4. doi:10.1109/BIBM.2012.6392622 | 2025-08-16 |
| perl-extutils-cppguess | public | Guess C++ compiler and flags. | 2025-08-16 |
| arvados-cwl-runner | public | Arvados Common Workflow Language runner. | 2025-08-16 |
| perl-pegex | public | Pegex Grammar for the Pegex Grammar Language. | 2025-08-16 |
| perl-set-intervaltree | public | An interval tree implementation in PERL. | 2025-08-15 |
| fgbio | public | A set of tools for working with genomic and high throughput sequencing data, including UMIs | 2025-08-15 |
| bioconda-utils | public | Utilities for building and managing bioconda recipes. | 2025-08-15 |
| perl-term-progressbar | public | Provide a progress meter on a standard terminal. | 2025-08-15 |
