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Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.5.3
  • linux-64 v1.5.3

conda install

To install this package run one of the following:
conda install bioconda::simka
conda install bioconda/label/cf201901::simka

Description


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