Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.
| Name | Type | Version | Platform | Labels | Updated | Size | Downloads | Actions |
|---|
linux-64/simka-1.5.3-h077b44d_5.tar.bz2 | conda | 1.5.3 | linux-64 | main | Dec 14, 2024, 04:38 AM | 10.38 MB | 197 | |
linux-64/simka-1.5.3-hdcf5f25_4.tar.bz2 | conda | 1.5.3 | linux-64 | main | May 16, 2023, 12:51 AM | 10.41 MB | 305 | |
osx-64/simka-1.5.3-hdf58011_4.tar.bz2 | conda | 1.5.3 | osx-64 | main | May 15, 2023, 09:32 PM | 8.93 MB | 1.4K | |
linux-64/simka-1.5.3-hdcf5f25_3.tar.bz2 | conda | 1.5.3 | linux-64 | main | May 15, 2023, 01:51 AM | 10.39 MB | 164 | |
linux-64/simka-1.5.3-hd03093a_3.tar.bz2 | conda | 1.5.3 | linux-64 | main | May 12, 2023, 06:45 PM | 10.15 MB | 167 | |
osx-64/simka-1.5.3-h66d0458_3.tar.bz2 | conda | 1.5.3 | osx-64 | main | May 12, 2023, 02:57 PM | 8.99 MB | 53 | |
osx-64/simka-1.5.3-h6151dfb_2.tar.bz2 | conda | 1.5.3 | osx-64 | main | Feb 23, 2022, 05:41 AM | 8.83 MB | 68 | |
linux-64/simka-1.5.3-hd03093a_2.tar.bz2 | conda | 1.5.3 | linux-64 | main | Feb 21, 2022, 07:06 PM | 10.15 MB | 294 | |
osx-64/simka-1.5.3-h87af4ef_1.tar.bz2 | conda | 1.5.3 | osx-64 | main | Mar 26, 2021, 04:35 AM | 8.6 MB | 1.5K | |
linux-64/simka-1.5.3-h9a82719_1.tar.bz2 | conda | 1.5.3 | linux-64 | main | Mar 25, 2021, 07:24 AM | 10.16 MB | 345 | |
osx-64/simka-1.5.3-h7475705_0.tar.bz2 | conda | 1.5.3 | osx-64 | main | Jan 13, 2021, 10:27 AM | 8.72 MB | 231 | |
linux-64/simka-1.5.3-he513fc3_0.tar.bz2 | conda | 1.5.3 | linux-64 | main | Jan 13, 2021, 10:27 AM | 9.86 MB | 304 | |
osx-64/simka-1.5.2-h2dec4b4_0.tar.bz2 | conda | 1.5.2 | osx-64 | main | Feb 25, 2020, 07:34 AM | 5.54 MB | 3.6K | |
linux-64/simka-1.5.2-he513fc3_0.tar.bz2 | conda | 1.5.2 | linux-64 | main | Feb 25, 2020, 07:34 AM | 6.77 MB | 354 | |
linux-64/simka-1.5.1-he513fc3_0.tar.bz2 | conda | 1.5.1 | linux-64 | main | Sep 5, 2019, 07:39 PM | 6.76 MB | 355 | |
osx-64/simka-1.5.1-h2dec4b4_0.tar.bz2 | conda | 1.5.1 | osx-64 | main | Sep 5, 2019, 07:32 PM | 5.53 MB | 4.0K | |
linux-64/simka-1.5.0-he513fc3_0.tar.bz2 | conda | 1.5.0 | linux-64 | main | Aug 30, 2019, 01:04 PM | 6.77 MB | 343 | |
osx-64/simka-1.5.0-h2dec4b4_0.tar.bz2 | conda | 1.5.0 | osx-64 | main | Aug 30, 2019, 12:58 PM | 5.54 MB | 4.0K | |
linux-64/simka-1.4.0-he941832_0.tar.bz2 | conda | 1.4.0 | linux-64 | maincf201901 | Sep 13, 2018, 11:16 AM | 6.32 MB | 544 | |
osx-64/simka-1.4.0-he941832_0.tar.bz2 | conda | 1.4.0 | osx-64 | maincf201901 | Sep 13, 2018, 11:10 AM | 5.64 MB | 4.4K |