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cellqc
|
public |
Cellqc standardizes the qualiy control of single-cell RNA-Seq (scRNA) data to render clean feature count matrices.
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2025-05-09 |
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dna_features_viewer
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public |
Plot features from DNA sequences (e.g. Genbank) with Python.
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2025-05-09 |
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illumina-interop
|
public |
The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).
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2025-05-09 |
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muat
|
public |
A package for Mutation Attention Tool
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2025-05-09 |
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r-dndscv
|
public |
dN/dS methods to quantify selection in cancer and somatic evolution.
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2025-05-09 |
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r-mobster
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public |
Model-based subclonal deconvolution from bulk sequencing.
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2025-05-09 |
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eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
|
2025-05-09 |
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r-amlmapr
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public |
R package for visualizing and analyzing AML transcriptome data
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2025-05-09 |
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r-ctree
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public |
Clone trees for Cancer Evolution studies from bulk sequencing data.
|
2025-05-08 |
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anchorwave
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public |
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation.
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2025-05-07 |
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integron_finder
|
public |
Integron Finder aims at detecting integrons in DNA sequences.
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2025-05-07 |
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smetana
|
public |
Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities.
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2025-05-07 |
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taxor
|
public |
Fast and space-efficient taxonomic classification of long reads.
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2025-05-07 |
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argo
|
public |
Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping
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2025-05-07 |
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mtbseq
|
public |
Pipeline for WGS analysis of M. tuberculosis
|
2025-05-07 |
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perl-crypt-openssl-rsa
|
public |
RSA encoding and decoding, using the openSSL libraries
|
2025-05-07 |
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fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
|
2025-05-07 |
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treesapp
|
public |
TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins
|
2025-05-07 |
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bio
|
public |
Command-line utilities to make bioinformatics explorations more enjoyable.
|
2025-05-07 |
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gprofiler-official
|
public |
Functional enrichment analysis and more via the g:Profiler toolkit
|
2025-05-07 |
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bioconductor-metmashr
|
public |
Metabolite Mashing with R
|
2025-05-07 |
|
flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-05-07 |
|
flye
|
public |
A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs.
|
2025-05-07 |
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gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2025-05-06 |
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phipack
|
public |
Simple, rapid, and statistically efficient test for recombination.
|
2025-05-06 |
