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r-dndscv

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dN/dS methods to quantify selection in cancer and somatic evolution.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::r-dndscv

Usage Tracking

0.1.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Description: This package contains functions for studying selection on coding sequences using a Poisson implementation of dN/dS. A Poisson model of dN/dS facilitates the study of selection beyond traditional codon models, including complex context-dependent mutation effects and selection on nonsense and splice site mutations. This model is best suited for resequencing studies, with very low density of mutations per base pair. The model was initially developed for cancer genome sequencing studies, and specific functions are provided to perform driver gene discovery using the dNdScv method on human cancer genomic data.

About

Summary

dN/dS methods to quantify selection in cancer and somatic evolution.

Last Updated

May 9, 2025 at 18:59

License

GPL-3.0-or-later

Total Downloads

452

Supported Platforms

noarch