| Package Name | Access | Summary | Updated |
|---|---|---|---|
| methyldackel | public | A (mostly) universal methylation extractor for BS-seq experiments. Formerly named PileOMeth. | 2025-05-09 |
| igua | public | Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification. | 2025-05-09 |
| gfastats | public | The swiss army knife for genome assembly | 2025-05-09 |
| mysterymaster | public | Graphical Oxford Nanopore read demultiplexer | 2025-05-09 |
| cellqc | public | Cellqc standardizes the qualiy control of single-cell RNA-Seq (scRNA) data to render clean feature count matrices. | 2025-05-09 |
| dna_features_viewer | public | Plot features from DNA sequences (e.g. Genbank) with Python. | 2025-05-09 |
| illumina-interop | public | The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores). | 2025-05-09 |
| muat | public | A package for Mutation Attention Tool | 2025-05-09 |
| r-dndscv | public | dN/dS methods to quantify selection in cancer and somatic evolution. | 2025-05-09 |
| r-mobster | public | Model-based subclonal deconvolution from bulk sequencing. | 2025-05-09 |
| eukulele | public | Easy taxonomic annotation for eukaryotic microbes. | 2025-05-09 |
| r-amlmapr | public | R package for visualizing and analyzing AML transcriptome data | 2025-05-09 |
| r-ctree | public | Clone trees for Cancer Evolution studies from bulk sequencing data. | 2025-05-08 |
| anchorwave | public | Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation. | 2025-05-07 |
| integron_finder | public | Integron Finder aims at detecting integrons in DNA sequences. | 2025-05-07 |
| smetana | public | Species METabolic interaction ANAlysis (SMETANA) is a python-based command line tool to analyse microbial communities. | 2025-05-07 |
| taxor | public | Fast and space-efficient taxonomic classification of long reads. | 2025-05-07 |
| argo | public | Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping | 2025-05-07 |
| mtbseq | public | Pipeline for WGS analysis of M. tuberculosis | 2025-05-07 |
| perl-crypt-openssl-rsa | public | RSA encoding and decoding, using the openSSL libraries | 2025-05-07 |
| fast2q | public | A Python3 program that counts sequence occurrences in FASTQ files. | 2025-05-07 |
| treesapp | public | TreeSAPP is a functional and taxonomic annotation tool for microbial genomes and proteins | 2025-05-07 |
| bio | public | Command-line utilities to make bioinformatics explorations more enjoyable. | 2025-05-07 |
| gprofiler-official | public | Functional enrichment analysis and more via the g:Profiler toolkit | 2025-05-07 |
| bioconductor-metmashr | public | Metabolite Mashing with R | 2025-05-07 |
