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comparem2
|
public |
CompareM2 genomes-to-report pipeline
|
2025-02-02 |
|
needletail
|
public |
Fast FASTX parsing in Python
|
2025-02-02 |
|
piscem
|
public |
piscem is a next-generation compacted colored de Bruijn Graph-based indexer and mapper
|
2025-02-01 |
|
nafcodec
|
public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
|
2025-02-01 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-02-01 |
|
genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2025-01-31 |
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pymzml
|
public |
High-throughput mzML parsing.
|
2025-01-31 |
|
qtlseq
|
public |
QTL-seq: pipeline to identify causative mutations responsible for a phenotype.
|
2025-01-31 |
|
nanomotif
|
public |
Identifying methlyation motifs in nanopore data
|
2025-01-31 |
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mutmap
|
public |
MutMap: pipeline to identify causative mutations responsible for a phenotype.
|
2025-01-31 |
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grenedalf
|
public |
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
|
2025-01-31 |
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kmer-jellyfish
|
public |
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence
|
2025-01-31 |
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piranha-polio
|
public |
Poliovirus Investigation Resource Automating Nanopore Haplotype Analysis
|
2025-01-31 |
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krakenuniq
|
public |
Metagenomics classifier with unique k-mer counting for more specific results
|
2025-01-31 |
|
ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-01-30 |
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snakebids
|
public |
BIDS integration into snakemake workflows
|
2025-01-30 |
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harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-01-30 |
|
wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2025-01-30 |
|
ms2rescore
|
public |
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
|
2025-01-30 |
|
matchtigs
|
public |
"Different algorithms for computing small and minimum plain text representations of kmer sets."
|
2025-01-30 |
|
scirpy
|
public |
A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.
|
2025-01-30 |
|
sequencetools
|
public |
A tool (pileupCaller) for processing ancient DNA sequencing data
|
2025-01-30 |
|
hybracter
|
public |
An automated long-read first bacterial genome assembly pipeline.
|
2025-01-30 |
|
resistify
|
public |
A resistance gene annotation tool.
|
2025-01-29 |
|
shasta
|
public |
De novo assembly from Oxford Nanopore reads.
|
2025-01-29 |
|
perl-libwww-perl
|
public |
The World-Wide Web library for Perl.
|
2025-01-29 |
|
vartrix
|
public |
VarTrix is a software tool for extracting single cell variant information
from 10x Genomics single cell data.
|
2025-01-29 |
|
superintervals
|
public |
Rapid interval intersections
|
2025-01-29 |
|
rmlst_api
|
public |
API to perform rMLST on PubMLST.org
|
2025-01-29 |
|
perl-lwp-simple
|
public |
simple procedural interface to LWP
|
2025-01-29 |
|
hops
|
public |
Java tool to work with ancient metagenomics
|
2025-01-29 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-29 |
|
rnanorm
|
public |
Common RNA-seq normalization methods
|
2025-01-29 |
|
pacu_snp
|
public |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.
|
2025-01-29 |
|
pb-cpg-tools
|
public |
Collection of tools for the analysis of CpG data
|
2025-01-29 |
|
maxbin2
|
public |
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
|
2025-01-29 |
|
flashlfq
|
public |
Ultrafast label-free quantification algorithm for mass-spectrometry proteomics.
|
2025-01-29 |
|
vg
|
public |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
|
2025-01-29 |
|
perl-html-parser
|
public |
HTML parser class
|
2025-01-29 |
|
bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2025-01-29 |
|
bioconductor-copynumber
|
public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
|
2025-01-29 |
|
bioconductor-genomeinfodb
|
public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
|
2025-01-29 |
|
bioconductor-ucsc.utils
|
public |
Low-level utilities to retrieve data from the UCSC Genome Browser
|
2025-01-29 |
|
bioconductor-iranges
|
public |
Foundation of integer range manipulation in Bioconductor
|
2025-01-29 |
|
bioconductor-xvector
|
public |
Foundation of external vector representation and manipulation in Bioconductor
|
2025-01-29 |
|
bioconductor-s4vectors
|
public |
Foundation of vector-like and list-like containers in Bioconductor
|
2025-01-29 |
|
bioconductor-zlibbioc
|
public |
An R packaged zlib-1.2.5
|
2025-01-29 |
|
goldrush
|
public |
Linear-time de novo long read assembler, from the Bioinformatics Technology Lab
|
2025-01-29 |
|
abnumber
|
public |
AbNumber - Antibody numbering using ANARCI
|
2025-01-29 |
|
captus
|
public |
Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
|
2025-01-29 |
