| Package Name | Access | Summary | Updated |
|---|---|---|---|
| phynder | public | Efficient likelihood calculations to place samples into a phylogenetic tree. | 2025-09-19 |
| ngs-disambiguate | public | Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem | 2025-09-19 |
| snp-dists | public | Convert a FASTA alignment to SNP distance matrix | 2025-09-19 |
| smalt | public | SMALT aligns DNA sequencing reads with a reference genome. | 2025-09-18 |
| edena | public | No Summary | 2025-09-18 |
| rust-bio-tools | public | A growing collection of fast and secure command line utilities for dealing with NGS data implemented on top of Rust-Bio. | 2025-09-18 |
| codoff | public | codoff: program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome. | 2025-09-18 |
| aardvark | public | A tool for sniffing out the differences in vari-Ants | 2025-09-18 |
| abyss | public | Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler. | 2025-09-18 |
| plasmar | public | Plasmid Like Assembly Sequence Matching Algorithm for Resistance (PLASMAR) | 2025-09-18 |
| gamma | public | Tool for Gene Allele Mutation Microbial Assessment | 2025-09-18 |
| mtsv | public | MTSv is a suite of metagenomic binning and analysis tools. | 2025-09-18 |
| comebin | public | COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning | 2025-09-18 |
| hecatomb | public | Hecatomb: and end-to-end platform for viral metagenomics | 2025-09-18 |
| pantools | public | PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes. | 2025-09-18 |
| aminoextract | public | Extract amino acid sequences from a fasta file based on a GFF | 2025-09-18 |
| beagle | public | Beagle is a software package for phasing genotypes and for imputing ungenotyped markers. | 2025-09-18 |
| expam | public | Metagenomic profiling using a reference phylogeny | 2025-09-18 |
| biobb_haddock | public | biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking. | 2025-09-18 |
| haddock_biobb | public | HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project. | 2025-09-18 |
| filtlong | public | Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. | 2025-09-18 |
| augur | public | Process pathogen genome data for the Nextstrain platform. | 2025-09-18 |
| biobb_adapters | public | Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers. | 2025-09-18 |
| biobb_flexserv | public | Biobb_flexserv is the Biobb module collection for biomolecular flexibility studies on protein 3D structures. | 2025-09-18 |
| trinity | public | Trinity assembles transcript sequences from Illumina RNA-Seq data. | 2025-09-18 |
