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fc
|
public |
Accurate Assembly of Full-length Consensus for Viral Quasispecies.
|
2024-11-05 |
|
bubblegun
|
public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
|
2024-11-05 |
|
tinscan
|
public |
Find alignment signatures characteristic of transposon insertion sites.
|
2024-11-05 |
|
rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
|
2024-11-05 |
|
mutyper
|
public |
A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs.
|
2024-11-05 |
|
perl-unicode-normalize
|
public |
Unicode Normalization Forms
|
2024-11-05 |
|
perl-unicode-map
|
public |
Map charsets from and to UTF-16 unicode
|
2024-11-05 |
|
perl-bloom-faster
|
public |
Perl extension for the c library libbloom.
|
2024-11-05 |
|
perl-json-parse
|
public |
Read JSON into a Perl variable
|
2024-11-05 |
|
perl-crypt-openssl-random
|
public |
No Summary
|
2024-11-05 |
|
perl-ipc-sharelite
|
public |
Lightweight interface to shared memory
|
2024-11-05 |
|
perl-heap-simple-xs
|
public |
No Summary
|
2024-11-05 |
|
perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2024-11-05 |
|
perl-crypt-openssl-rsa
|
public |
RSA encoding and decoding, using the openSSL libraries
|
2024-11-05 |
|
perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-11-05 |
|
perl-filesys-df
|
public |
Perl extension for filesystem disk space information.
|
2024-11-05 |
|
decom
|
public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
|
2024-11-05 |
|
perl-unicode-utf8
|
public |
Encoding and decoding of UTF-8 encoding form
|
2024-11-05 |
|
perl-math-random
|
public |
Random Number Generators
|
2024-11-05 |
|
metabolabpy
|
public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
|
2024-11-04 |
|
cmaple
|
public |
MAximum Parsimonious Likelihood Estimation in C/C++.
|
2024-11-04 |
|
smudgeplot
|
public |
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
|
2024-11-04 |
|
gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2024-11-04 |
|
pyopal
|
public |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
|
2024-11-04 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-11-04 |
|
tiberius
|
public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
|
2024-11-04 |
|
mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2024-11-04 |
|
buscolite
|
public |
buscolite: busco analysis for gene predictions
|
2024-11-04 |
|
nf-test
|
public |
nf-test is a simple test framework for Nextflow pipelines.
|
2024-11-04 |
|
gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2024-11-04 |
|
cramino
|
public |
A tool for very fast quality assessment of long read cram/bam files.
|
2024-11-04 |
|
eagle2
|
public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
|
2024-11-04 |
|
ms-entropy
|
public |
This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data.
|
2024-11-04 |
|
pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2024-11-04 |
|
jarvis3
|
public |
Improved encoder for genomic sequences.
|
2024-11-04 |
|
bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-11-04 |
|
meta-neuro
|
public |
Medial Tractography Analysis (MeTA)
|
2024-11-03 |
|
msa4u
|
public |
A simple visualisation tool for Multiple Sequence Alignment.
|
2024-11-03 |
|
rabbitqcplus
|
public |
RabbitQCPlus is an efficient quality control tool for sequencing data
|
2024-11-03 |
|
bioconductor-protgenerics
|
public |
Generic infrastructure for Bioconductor mass spectrometry packages
|
2024-11-03 |
|
seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2024-11-03 |
|
amplici
|
public |
AmpliCI: Cluster amplicon sequences in a fastq file with or without UMIs.
|
2024-11-03 |
|
sentieon
|
public |
Accelerated performance bioinformatics tools for mapping and variant calling
|
2024-11-02 |
|
gsmap
|
public |
gsMap (genetically informed spatial mapping of cells for complex traits)
|
2024-11-02 |
|
nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI)
|
2024-11-02 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2024-11-02 |
|
svision-pro
|
public |
Neural-network-based long-read SV caller.
|
2024-11-02 |
|
csvtk
|
public |
A cross-platform, efficient, practical CSV/TSV toolkit
|
2024-11-02 |
|
fgsv
|
public |
Tools to find evidence for structural variation.
|
2024-11-02 |
|
fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2024-11-02 |
