|
nbitk
|
public |
nbitk: Naturalis BioInformatics ToolKit
|
2025-03-27 |
|
bam2plot
|
public |
Plot of coverage from bam file
|
2025-03-27 |
|
relecov-tools
|
public |
Tools for managing and processing of relecov data.
|
2025-03-27 |
|
perl-graph
|
public |
a Perl extension for keeping data partially sorted
|
2025-03-27 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-03-27 |
|
hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2025-03-27 |
|
zdb
|
public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
|
2025-03-27 |
|
snakemake-interface-executor-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its executor plugins.
|
2025-03-27 |
|
snakemake-storage-plugin-fs
|
public |
A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.
|
2025-03-27 |
|
arriba
|
public |
Fast and accurate gene fusion detection from RNA-Seq data
|
2025-03-26 |
|
sistr_cmd
|
public |
Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction
|
2025-03-26 |
|
snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2025-03-26 |
|
graphembed
|
public |
Efficient and Robust Graph/Network Embedding via High-Order Proximity Preservation or Recursive Sketching.
|
2025-03-26 |
|
fastcov
|
public |
This package installs fastcov and all it's dependencies. fastcov is used to plot coverage plots based on BAM files.
|
2025-03-25 |
|
alientrimmer
|
public |
Tool for trimming non-confident bases and alien oligo-nucleotide sequences from sequencing reads.
|
2025-03-25 |
|
bcftools-liftover-plugin
|
public |
Tools to work with GWAS-VCF summary statistics files (liftover plugin only)
|
2025-03-25 |
|
longcalld
|
public |
longcallD: local-haplotagging-based small and structural variant calling
|
2025-03-25 |
|
isotools
|
public |
Framework for the analysis of long read transcriptome sequencing data
|
2025-03-25 |
|
spacedust
|
public |
De novo discovery of conserved gene clusters in microbial genomes with Spacedust
|
2025-03-25 |
|
fastga
|
public |
FastGA - A Fast Genome Aligner.
|
2025-03-25 |
|
snakemake-interface-logger-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its logger plugins.
|
2025-03-25 |
|
gencube
|
public |
GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data.
|
2025-03-25 |
|
vcf_parser
|
public |
Small library for parsing vcf files.
|
2025-03-25 |
|
deacon
|
public |
Fast alignment-free sequence filter
|
2025-03-25 |
|
snakemake-executor-plugin-aws-batch
|
public |
A Snakemake executor plugin for submitting jobs to AWS Batch.
|
2025-03-25 |
|
cctyper
|
public |
CRISPRCasTyper: Automatic detection and subtyping of CRISPR-Cas operons
|
2025-03-25 |
|
mutserve
|
public |
Mutserve2 is a variant caller for the mitochondrial genome to detect homoplasmic and heteroplasmic sites in sequence data.
|
2025-03-25 |
|
hippunfold-dev
|
public |
Meta-package that installs hippunfold with development dependencies.
|
2025-03-25 |
|
formulaic-contrasts
|
public |
Build contrasts for models defined with formulaic
|
2025-03-25 |
|
rabbitsketch
|
public |
RabbitSketch is a highly optimized sketching library that exploits the power of modern multi-core CPUs.
|
2025-03-25 |
|
hippunfold
|
public |
This tool aims to automatically model the topological folding
structure of the human hippocampus, and computationally unfold it.
|
2025-03-25 |
|
afragmenter
|
public |
Schema-free, tunable protein domain segmentation tool for AlphaFold structures
|
2025-03-25 |
|
jacusa2
|
public |
JACUSA2 is a framework for accurate variant assessment, detecting SNVs and arrest events in NGS data.
|
2025-03-25 |
|
aliview
|
public |
AliView is an intuitive and fast alignment viewer and editor for DNA and amino acid sequences.
|
2025-03-25 |
|
r-pathosurveilr
|
public |
Utilities for interacting with the pathogensurveillance pipeline.
|
2025-03-25 |
|
danbing-tk
|
public |
Toolkit for VNTR genotyping and repeat-pan genome graph construction
|
2025-03-25 |
|
longbow
|
public |
A Python program for nanopore sequencing basecalling configuration prediction
|
2025-03-25 |
|
r-psminer
|
public |
Utilities for interacting with the pathogensurveillance pipeline.
|
2025-03-25 |
|
te-aid
|
public |
Annotation helper tool for the manual curation of transposable element consensus sequences
|
2025-03-25 |
|
lassaseq
|
public |
Tool for downloading Lassa virus sequences
|
2025-03-25 |
|
ebolaseq
|
public |
Tool for downloading and analyzing Ebola virus sequences
|
2025-03-25 |
|
snakemake-storage-plugin-sharepoint
|
public |
Snakemake storage plugin for reading and writing files on Microsoft SharePoint.
|
2025-03-25 |
|
cayman
|
public |
A command-line profiling tool for profiling CAZyme abundances in metagenomic datasets.
|
2025-03-25 |
|
pvga
|
public |
PVGA is a powerful virus-focused assembler that does both assembly and polishing.
|
2025-03-25 |
|
gqlib
|
public |
A gene quantification library.
|
2025-03-25 |
|
mitosalt
|
public |
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided.
|
2025-03-25 |
|
mitorsaw
|
public |
A tool for mitochondrial analysis for HiFi sequencing data
|
2025-03-25 |
|
artex
|
public |
Artex - Artic pipeline extension
|
2025-03-25 |
|
metator
|
public |
Metagenomic binning based on Hi-C data.
|
2025-03-25 |
|
ctc-scite
|
public |
CTC-SCITE is a software package to infer cell lineages of single-cells and clusters of single-cells.
|
2025-03-25 |
