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corona_lineage_dynamics
|
public |
Analyzing and visualizing pangolin lineages of GISAID metadata.
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2025-03-25 |
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vpt-segmentation-packing
|
public |
Packs cell boundaries for the Vizgen vzg2 file format
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2025-03-25 |
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muset
|
public |
A pipeline for building an abundance unitig matrix from FASTA/FASTQ files
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2025-03-25 |
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ctyper
|
public |
Genotyping sequence-resolved copy-number variation using pangenomes.
|
2025-03-25 |
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spp-dcj
|
public |
A tool for solving the small parsimony problem for natural genomes
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2025-03-25 |
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a3partitioner
|
public |
A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions
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2025-03-25 |
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egap
|
public |
EGAP pipeline for genome assembly and QC analysis
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2025-03-25 |
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pb-cpg-tools
|
public |
Collection of tools for the analysis of CpG data
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2025-03-25 |
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get_pangenes
|
public |
A versatile software package for calling pangenes from whole genome alignments
|
2025-03-25 |
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haplogrep3
|
public |
A tool for mtDNA haplogroup classification.
|
2025-03-25 |
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frag_gene_scan_rs
|
public |
Rust implementation of the gene prediction model for short and error-prone reads
|
2025-03-25 |
|
autobigs-cli
|
public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-03-25 |
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autobigs-engine
|
public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-03-25 |
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nafcodec
|
public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
|
2025-03-25 |
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kbo-cli
|
public |
Command-line interface for the kbo local aligner
|
2025-03-25 |
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grepq
|
public |
Quickly filter FASTQ files.
|
2025-03-25 |
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eastr
|
public |
Tool for emending alignments of spuriously spliced transcript reads.
|
2025-03-25 |
|
linkedsv
|
public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
|
2025-03-25 |
|
ourotools
|
public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
|
2025-03-25 |
|
biobb_morph
|
public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
|
2025-03-25 |
|
qimba
|
public |
Toolkit for metabarcoding analyses
|
2025-03-25 |
|
octopusv
|
public |
OctopusV: Advanced Structural Variant Analysis Toolkit
|
2025-03-25 |
|
r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
|
2025-03-25 |
|
geomloss
|
public |
Geometric loss functions between point clouds, images and volumes.
|
2025-03-25 |
|
memopair
|
public |
A package for identifying methylated motif pairs
|
2025-03-25 |
|
mrtrix3
|
public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
|
2025-03-25 |
|
snakebids
|
public |
BIDS integration into snakemake workflows
|
2025-03-25 |
|
seg-suite
|
public |
The seg suite provides tools for manipulating segments, alignments, and annotations of sequences.
|
2025-03-25 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-03-25 |
|
msoma
|
public |
mSOMA: Somatic Mutation Detection using a betabinomial null model
|
2025-03-25 |
|
fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
|
2025-03-25 |
|
glean-gene
|
public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
|
2025-03-25 |
|
r-scroshi
|
public |
scROSHI: robust supervised hierarchical identification of single cells
|
2025-03-25 |
|
isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-03-25 |
|
excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data.
|
2025-03-25 |
|
primalbedtools
|
public |
A collection of tools for working with primer.bed files
|
2025-03-25 |
|
pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-03-25 |
|
caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
|
2025-03-25 |
|
unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-03-25 |
|
plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap.
|
2025-03-25 |
|
bioconductor-mosdef
|
public |
MOSt frequently used and useful Differential Expression Functions
|
2025-03-25 |
|
bioconductor-epiregulon.extra
|
public |
Companion package to epiregulon with additional plotting, differential and graph functions
|
2025-03-25 |
|
bioconductor-scdiagnostics
|
public |
Cell type annotation diagnostics
|
2025-03-25 |
|
bioconductor-enrichdo
|
public |
a Global Weighted Model for Disease Ontology Enrichment Analysis
|
2025-03-25 |
|
bioconductor-camutqc
|
public |
An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations
|
2025-03-25 |
|
bioconductor-broadseq
|
public |
broadSeq : for streamlined exploration of RNA-seq data
|
2025-03-25 |
|
bioconductor-tidyspatialexperiment
|
public |
SpatialExperiment with tidy principles
|
2025-03-25 |
|
bioconductor-prone
|
public |
The PROteomics Normalization Evaluator
|
2025-03-25 |
|
bioconductor-msbackendmetabolights
|
public |
Retrieve Mass Spectrometry Data from MetaboLights
|
2025-03-25 |
|
bioconductor-omicsmlrepor
|
public |
Search harmonized metadata created under the OmicsMLRepo project
|
2025-03-25 |
