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r-flanders

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Fast colocalization using AnnData objects in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::r-flanders

Usage Tracking

1.0.1
1.0.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

flanders is an R package designed to seamlessly convert finemapping output files from the nf-flanders pipeline into a unified AnnData object and facilitate colocalization analysis. The package provides functions to: - Convert multiple *finemap.rds files into a single AnnData object with credible set metadata. - Generate an input table (coloc_input) for colocalization testing. - Run pairwise colocalization tests, with minimal runtime overhead (typically 5–10 tests per second on standard hardware).

About

Summary

Fast colocalization using AnnData objects in R

Last Updated

Aug 28, 2025 at 00:45

License

MIT

Total Downloads

247

Supported Platforms

noarch