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gfastats
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public |
The swiss army knife for genome assembly
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2024-09-25 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
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2024-09-25 |
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mview
|
public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
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2024-09-25 |
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kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
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2024-09-25 |
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recentrifuge
|
public |
Robust comparative analysis and contamination removal for metagenomics
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2024-09-25 |
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sansa
|
public |
Structural variant annotation
|
2024-09-25 |
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r-grain
|
public |
Probability propagation in graphical independence networks, also known as Bayesian networks or probabilistic expert systems.
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2024-09-24 |
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hifiasm_meta
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public |
Metagenome assembler for Hifi reads, based on hifiasm.
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2024-09-24 |
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prymer
|
public |
Python Primer Design Library
|
2024-09-24 |
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sigprofilermatrixgenerator
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public |
SigProfiler matrix generator tool.
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2024-09-24 |
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planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
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2024-09-24 |
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macs3
|
public |
Model Based Analysis for ChIP-Seq data.
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2024-09-24 |
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impg
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public |
impg: implicit pangenome graphs
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2024-09-24 |
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msisensor-rna
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public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
|
2024-09-24 |
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bbmap
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public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-09-24 |
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derna
|
public |
RNA sequence design for a target protein sequence.
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2024-09-24 |
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leviosam2
|
public |
Fast and accurate coordinate conversion between assemblies.
|
2024-09-24 |
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expam
|
public |
Metagenomic profiling using a reference phylogeny
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2024-09-24 |
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clinker-py
|
public |
Gene cluster comparison figure generator
|
2024-09-24 |
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ppanggolin
|
public |
PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph
|
2024-09-24 |
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mtgrasp
|
public |
reference-grade de novo animal mitochondrial genome assembly and standardization
|
2024-09-23 |
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mgatk
|
public |
Mitochondrial genome analysis toolkit.
|
2024-09-23 |
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itsxpress
|
public |
ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files
|
2024-09-23 |
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guidescan
|
public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
|
2024-09-23 |
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pangolin-data
|
public |
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
|
2024-09-23 |
|
varlociraptor
|
public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
|
2024-09-23 |
|
vembrane
|
public |
Filter VCF/BCF files with Python expressions.
|
2024-09-23 |
|
macrel
|
public |
A pipeline for AMP (antimicrobial peptide) prediction
|
2024-09-23 |
|
libcifpp
|
public |
Library containing code to manipulate mmCIF and PDB files.
|
2024-09-23 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2024-09-23 |
|
tooldistillator
|
public |
Tool to extract and aggregate information from different tool outputs to JSON parsable files
|
2024-09-23 |
|
reneo
|
public |
Reneo: Unraveling Viral Genomes from Metagenomes
|
2024-09-23 |
|
checkm-genome
|
public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2024-09-23 |
|
gsearch
|
public |
gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search
|
2024-09-23 |
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bactopia
|
public |
Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
|
2024-09-22 |
|
fastlin
|
public |
fastlin, ultra-fast MTBC lineage typing
|
2024-09-22 |
|
perl-minion
|
public |
Job queue
|
2024-09-21 |
|
bwa-aln-interactive
|
public |
Version of the BWA aln read mapper for interactive alignment.
|
2024-09-21 |
|
recognizer
|
public |
A tool for domain based annotation with the COG database
|
2024-09-21 |
|
ntroot
|
public |
Ancestry inference from genomic data
|
2024-09-21 |
|
neat
|
public |
Toolset for generating synthethic FASTQ, VCF and BAM files.
|
2024-09-21 |
|
eukfinder
|
public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
|
2024-09-21 |
|
bactopia-qc
|
public |
The methods used in Bactopia for read QC
|
2024-09-21 |
|
ntedit
|
public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
|
2024-09-20 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2024-09-20 |
|
squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
|
2024-09-20 |
|
percolator
|
public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
|
2024-09-20 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-09-20 |
|
phylodeep
|
public |
Deep-learning parameter estimation and model selection from phylogenetic trees.
|
2024-09-20 |
|
fastq-screen
|
public |
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
|
2024-09-20 |
