|
beagle
|
public |
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
|
2024-11-14 |
|
arvados-python-client
|
public |
Python API for Arvados
|
2024-11-14 |
|
itsxpress
|
public |
ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files
|
2024-11-14 |
|
fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2024-11-14 |
|
fairy
|
public |
fairy calculates all-to-all approximate coverage for multi-sample metagenomic binning > 100x faster than alignment.
|
2024-11-14 |
|
get_homologues
|
public |
A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST
|
2024-11-14 |
|
pybiolib
|
public |
BioLib Python Client
|
2024-11-14 |
|
hybracter
|
public |
An automated long-read first bacterial genome assembly pipeline.
|
2024-11-14 |
|
gseapy
|
public |
Gene Set Enrichment Analysis in Python
|
2024-11-13 |
|
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2024-11-13 |
|
dupsifter
|
public |
A tool for PCR duplicate marking of WGBS (and WGS) data.
|
2024-11-13 |
|
snipit
|
public |
Visualize snps relative to a reference sequence
|
2024-11-13 |
|
omamer
|
public |
OMAmer - tree-driven and alignment-free protein assignment to sub-families
|
2024-11-13 |
|
cadd-scripts
|
public |
CADD scripts release for offline scoring
|
2024-11-13 |
|
pacu_snp
|
public |
PACU is a workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.
|
2024-11-13 |
|
cgat-apps
|
public |
Computational Genomics Analysis Toolkit.
|
2024-11-13 |
|
teloclip
|
public |
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
|
2024-11-13 |
|
gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2024-11-13 |
|
bayestyper
|
public |
A method for variant graph genotyping based on exact alignment of k-mers
|
2024-11-13 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2024-11-12 |
|
regenie
|
public |
Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies (GWAS).
|
2024-11-12 |
|
biobb_analysis
|
public |
Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
|
2024-11-12 |
|
atlas
|
public |
ATLAS: Analysis Tools for Ancient and Low-depth Samples
|
2024-11-12 |
|
biobb_amber
|
public |
Biobb_amber is a BioBB category for AMBER MD package.
|
2024-11-12 |
|
gnparser
|
public |
GNparser normalises scientific names and extracts their semantic elements
|
2024-11-12 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2024-11-12 |
|
coptr
|
public |
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
|
2024-11-12 |
|
yacht
|
public |
YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).
|
2024-11-12 |
|
cd-hit
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-11-12 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2024-11-12 |
|
r-seamless
|
public |
Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors.
|
2024-11-12 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2024-11-12 |
|
aspera-cli
|
public |
Command Line Interface for IBM Aspera products.
|
2024-11-12 |
|
orthodb
|
public |
Interface to OrthoDB REST API.
|
2024-11-12 |
|
vg
|
public |
Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
|
2024-11-12 |
|
dnaio
|
public |
Read and write FASTA and FASTQ files efficiently
|
2024-11-12 |
|
strainge
|
public |
Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
|
2024-11-12 |
|
cellprofiler
|
public |
CellProfiler is free, open-source software for quantitative analysis of biological images.
|
2024-11-12 |
|
matchms
|
public |
Python library for fuzzy comparison of mass spectrum data and other Python objects
|
2024-11-12 |
|
cooltools
|
public |
Analysis tools for genomic interaction data stored in .cool format
|
2024-11-11 |
|
emu-pca
|
public |
EM-PCA for Ultra-low Coverage Sequencing Data.
|
2024-11-11 |
|
thapbi-pict
|
public |
THAPBI Phytophthora ITS1 Classifier Tool (PICT).
|
2024-11-11 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover
|
2024-11-11 |
|
melon
|
public |
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
|
2024-11-11 |
|
metaphor
|
public |
Metaphor - Metagenomic Pipeline for Short Reads
|
2024-11-11 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-11 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-11 |
|
muscle
|
public |
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences
|
2024-11-11 |
|
reseek
|
public |
Protein structure alignment and search algorithm
|
2024-11-10 |
|
squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
|
2024-11-10 |
