| Package Name | Access | Summary | Updated |
|---|---|---|---|
| galaxy-objectstore | public | The Galaxy object store framework and default implementations. | 2025-09-24 |
| djinn | public | Convert your linked-read data between formats, almost like magic. | 2025-09-24 |
| galaxy-data | public | The Galaxy models, datatype framework, and datatype implementations. | 2025-09-24 |
| latch | public | The Latch python bioinformatics framework. | 2025-09-24 |
| galaxy-files | public | The Galaxy file sources framework and default plugins. | 2025-09-24 |
| galaxy-schema | public | The Galaxy API schema objects. | 2025-09-24 |
| galaxy-job-execution | public | Galaxy job execution runtime utilities. | 2025-09-24 |
| mgnify-pipelines-toolkit | public | Collection of scripts and tools for MGnify pipelines. | 2025-09-24 |
| galaxy-files-full | public | The Galaxy file sources framework and default plugins. | 2025-09-24 |
| ensembl-vep | public | Ensembl Variant Effect Predictor | 2025-09-24 |
| orthologer | public | Ortholog detection for comparative genomics and fast functional annotation behind OrthoDB and BUSCO. | 2025-09-24 |
| genomeconstellation | public | Fast, accurate and versatile k-mer based classification system | 2025-09-24 |
| kmertools | public | kmertools: DNA Vectorisation Tool | 2025-09-24 |
| perl-test-inter | public | Framework for more readable interactive test scripts. | 2025-09-24 |
| conifer | public | Calculate confidence scores from Kraken2 output. | 2025-09-24 |
| imfusion | public | No Summary | 2025-09-24 |
| wgsim | public | No Summary | 2025-09-24 |
| tophat | public | A spliced read mapper for RNA-Seq. | 2025-09-24 |
| clipkit | public | Alignment trimming software for phylogenetics. | 2025-09-24 |
| phanotate | public | Phanotate gene caller for phages | 2025-09-24 |
| flash2 | public | Merge paired-end reads from fragments that are shorter than twice the read length | 2025-09-24 |
| squeakr | public | An Exact and Approximate k-mer Counting System. | 2025-09-24 |
| mira | public | MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads). | 2025-09-24 |
| perl-sys-info-driver-osx | public | OSX driver for Sys::Info. | 2025-09-24 |
| hyphy | public | An open-source software package for comparative sequence analysis using stochastic evolutionary models. | 2025-09-24 |
