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bamdam
|
public |
A post-mapping, post-least-common-ancestor toolkit for ancient DNA analysis.
|
2025-09-25 |
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merquryfk
|
public |
MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
|
2025-09-25 |
|
r-dimsum
|
public |
An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
|
2025-09-25 |
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relecov-tools
|
public |
Tools for managing and processing of relecov data.
|
2025-09-25 |
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flexiformatter
|
public |
Moving flexiplex barcode and UMI to bam tags
|
2025-09-25 |
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locityper
|
public |
Targeted genotyper for complex polymorphic loci from short and long read WGS.
|
2025-09-25 |
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octopusv
|
public |
OctopusV: Advanced Structural Variant Analysis Toolkit.
|
2025-09-25 |
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ggcaller
|
public |
A de Bruijn graph-based gene-caller and pangenome analysis tool
|
2025-09-25 |
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read2tree
|
public |
Building phylogenetic trees directly from sequencing reads.
|
2025-09-24 |
|
pecat
|
public |
A phased error correction and assembly tool
|
2025-09-24 |
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rxdock
|
public |
RxDock is a fork of rDock (GitLab), a fast, versatile and open-source program for docking ligands to proteins and nucleic acids.
|
2025-09-24 |
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squid
|
public |
Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data
|
2025-09-24 |
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mist_typing
|
public |
MiST is a rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.
|
2025-09-24 |
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vuegen
|
public |
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
|
2025-09-24 |
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hmftools-lilac
|
public |
LILAC is a WGS tool to determine HLA Class I types.
|
2025-09-24 |
|
caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
|
2025-09-24 |
|
phu
|
public |
Phage Utilities (phu): modular toolkit for clustering, classifying, and analyzing viral sequences.
|
2025-09-24 |
|
kcftools
|
public |
Rapid method to screen for introgression using k-mer counting
|
2025-09-24 |
|
paidiverpy
|
public |
A library to preprocess image data.
|
2025-09-24 |
|
perl-module-corelist
|
public |
What modules shipped with versions of perl.
|
2025-09-24 |
|
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2025-09-24 |
|
gene-fetch
|
public |
High-throughput NCBI Sequence Retrieval Tool
|
2025-09-24 |
|
galaxy-objectstore
|
public |
The Galaxy object store framework and default implementations.
|
2025-09-24 |
|
djinn
|
public |
Convert your linked-read data between formats, almost like magic.
|
2025-09-24 |
|
galaxy-data
|
public |
The Galaxy models, datatype framework, and datatype implementations.
|
2025-09-24 |
