| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mehari | public | VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust. | 2025-09-26 |
| emboss | public | The European Molecular Biology Open Software Suite | 2025-09-26 |
| consel | public | CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection | 2025-09-26 |
| lsabgc | public | lsaBGC-Pan - refined workflow for pan-BGC-omic evolutionary investigations. | 2025-09-26 |
| pybedlite | public | Lightweight python classes for interfacing with bed intervals. | 2025-09-26 |
| pybwa | public | Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa. | 2025-09-26 |
| pm4ngs | public | PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis. | 2025-09-26 |
| pharokka | public | Fast Phage Annotation Program | 2025-09-25 |
| kmc | public | Tools for efficient k-mer counting and filtering of reads based on k-mer content. | 2025-09-25 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| vcfsim | public | Script for generating simulated VCF's leveraging a coalescent simulating backend. | 2025-09-25 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| bgen-cpp | public | Reference implementation of the BGEN format, written in C++ | 2025-09-25 |
| egglib | public | Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts. | 2025-09-25 |
| gnuplot-py | public | No Summary | 2025-09-25 |
| soapdenovo2-gapcloser | public | a tool named GapCloser for SOAPdenovo. | 2025-09-25 |
| piper | public | A lightweight python toolkit for gluing together restartable, robust command line pipelines. | 2025-09-25 |
| amiga | public | Analysis of Microbial Growth Assays | 2025-09-25 |
| paraviewer | public | Automated visualization generator for Paraphase HiFi analysis tool | 2025-09-25 |
| zol | public | zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters. | 2025-09-25 |
| ngs-bits | public | Short-read sequencing tools. | 2025-09-25 |
| cenmap | public | A centromere mapping and annotation pipeline for T2T human and primate genome assemblies implemented in Snakemake. | 2025-09-25 |
| pxblat | public | PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT. | 2025-09-25 |
| seqwin | public | Ultrafast identification of signature sequences in microbial genomes via minimizer graphs | 2025-09-25 |
| stemcnv-check | public | StemCNV-check: CNV Based Quality Control Workflow for Stem Cell SNP Array Data. | 2025-09-25 |
