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bioconductor-fgsea
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public |
Fast Gene Set Enrichment Analysis
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2025-02-07 |
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bioconductor-xcms
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public |
LC-MS and GC-MS Data Analysis
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2025-02-07 |
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bioconductor-camera
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public |
Collection of annotation related methods for mass spectrometry data
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2025-02-07 |
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bioconductor-massspecwavelet
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public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
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2025-02-07 |
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bioconductor-globalancova
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public |
Global test for groups of variables via model comparisons
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2025-02-06 |
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bioconductor-msnbase
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public |
Base Functions and Classes for Mass Spectrometry and Proteomics
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2025-02-06 |
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bioconductor-multtest
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public |
Resampling-based multiple hypothesis testing
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2025-02-06 |
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bioconductor-rbgl
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public |
An interface to the BOOST graph library
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2025-02-06 |
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bioconductor-delayedarray
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public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
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2025-02-06 |
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bioconductor-mzr
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public |
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
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2025-02-06 |
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bioconductor-affyio
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public |
Tools for parsing Affymetrix data files
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2025-02-06 |
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bioconductor-vsn
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public |
Variance stabilization and calibration for microarray data
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2025-02-06 |
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bioconductor-affy
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public |
Methods for Affymetrix Oligonucleotide Arrays
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2025-02-06 |
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bioconductor-genomicranges
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public |
Representation and manipulation of genomic intervals
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2025-02-06 |
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bioconductor-rgraphviz
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public |
Provides plotting capabilities for R graph objects
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2025-02-06 |
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bioconductor-genefilter
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public |
genefilter: methods for filtering genes from high-throughput experiments
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2025-02-06 |
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bioconductor-graph
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public |
graph: A package to handle graph data structures
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2025-02-06 |
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bioconductor-preprocesscore
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public |
A collection of pre-processing functions
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2025-02-06 |
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bioconductor-sva
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public |
Surrogate Variable Analysis
|
2025-02-06 |
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bioconductor-edger
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public |
Empirical Analysis of Digital Gene Expression Data in R
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2025-02-06 |
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bioconductor-impute
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public |
impute: Imputation for microarray data
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2025-02-06 |
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r-jackstraw
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public |
Test for association between the observed data and their systematic patterns of variations. Systematic patterns may be captured by latent variables using principal component analysis (PCA), factor analysis (FA), and related methods. The jackstraw enables statistical testing for association between observed variables and latent variables, as captured by PCs or other estimates. Similarly, unsupervised clustering, such as K-means clustering, partition around medoids (PAM), and others, finds subpopulations among the observed variables. The jackstraw estimates statistical significance of cluster membership, including unsupervised evaluation of cell identities in single cell RNA-seq. P-values and posterior probabilities allows one to rigorously evaluate the strength of cluster membership assignments.
|
2025-02-05 |
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bioconductor-biocparallel
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public |
Bioconductor facilities for parallel evaluation
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2025-02-05 |
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bioconductor-pcamethods
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public |
A collection of PCA methods
|
2025-02-05 |
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bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-02-05 |
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bioconductor-biocgenerics
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public |
S4 generic functions used in Bioconductor
|
2025-01-29 |
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bioconductor-copynumber
|
public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
|
2025-01-29 |
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bioconductor-genomeinfodb
|
public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
|
2025-01-29 |
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bioconductor-iranges
|
public |
Foundation of integer range manipulation in Bioconductor
|
2025-01-29 |
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bioconductor-xvector
|
public |
Foundation of external vector representation and manipulation in Bioconductor
|
2025-01-29 |
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bioconductor-s4vectors
|
public |
Foundation of vector-like and list-like containers in Bioconductor
|
2025-01-29 |
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bioconductor-zlibbioc
|
public |
An R packaged zlib-1.2.5
|
2025-01-29 |
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bioconductor-biostrings
|
public |
Efficient manipulation of biological strings
|
2025-01-17 |
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bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-01-08 |
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bioconductor-variancepartition
|
public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
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bioconductor-ideal
|
public |
Interactive Differential Expression AnaLysis
|
2025-01-06 |
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bioconductor-primirtss
|
public |
Prediction of pri-miRNA Transcription Start Site
|
2025-01-05 |
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bioconductor-mafdb.exac.r1.0.grch38
|
public |
Minor allele frequency data from ExAC release 1.0 for GRCh38
|
2025-01-05 |
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bioconductor-mageckflute
|
public |
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
|
2025-01-05 |
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bioconductor-isoformswitchanalyzer
|
public |
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
|
2025-01-05 |
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bioconductor-prolocdata
|
public |
Data accompanying the pRoloc package
|
2025-01-05 |
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bioconductor-biocancer
|
public |
Interactive Multi-Omics Cancers Data Visualization and Analysis
|
2025-01-05 |
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bioconductor-mafdb.1kgenomes.phase3.hs37d5
|
public |
Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5
|
2025-01-04 |
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bioconductor-mafdb.1kgenomes.phase1.grch38
|
public |
Minor allele frequency data from 1000 Genomes Phase 1 for GRCh38
|
2025-01-04 |
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bioconductor-mafdb.1kgenomes.phase3.grch38
|
public |
Minor allele frequency data from 1000 Genomes Phase 3 for GRCh38
|
2025-01-04 |
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bioconductor-mafdb.topmed.freeze5.hg19
|
public |
Minor allele frequency data from TOPMed for hg19
|
2025-01-04 |
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bioconductor-mafdb.exac.r1.0.nontcga.grch38
|
public |
Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for GRCh38
|
2025-01-04 |
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bioconductor-mafdb.gnomadex.r2.1.hs37d5
|
public |
Minor allele frequency data from gnomAD exomes release 2.1 for hs37d5
|
2025-01-04 |
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bioconductor-mafdb.1kgenomes.phase1.hs37d5
|
public |
Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5
|
2025-01-04 |
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bioconductor-mafdb.topmed.freeze5.hg38
|
public |
Minor allele frequency data from TOPMed for hg38
|
2025-01-04 |
