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bioconductor-funtoonorm
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public |
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
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2025-04-22 |
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bioconductor-illuminahumanmethylation27kmanifest
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public |
Manifest for Illumina's 27k array data
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2025-04-22 |
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bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19
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public |
An annotation package for Illumina's EPIC methylation arrays.
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2025-04-22 |
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bioconductor-flowsorted.dlpfc.450k
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public |
Illumina HumanMethylation data on sorted frontal cortex cell populations
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2025-04-22 |
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bioconductor-flowsorted.cordbloodnorway.450k
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public |
Illumina HumanMethylation data on sorted cord blood cell populations
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2025-04-22 |
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bioconductor-flowsorted.cordblood.450k
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public |
Illumina 450k data on sorted cord blood cells
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2025-04-22 |
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bioconductor-hmyrib36
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public |
YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes
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2025-04-22 |
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bioconductor-ceuhm3
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public |
ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort
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2025-04-22 |
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bioconductor-ceu1kg
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public |
CEU (N=60) genotypes from 1000 genomes pilot phase I
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2025-04-22 |
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bioconductor-compartmap
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public |
Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq
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2025-04-22 |
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bioconductor-yri1kgv
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public |
expression + genotype on 79 unrelated YRI individuals
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2025-04-22 |
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bioconductor-ggdata
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public |
all 90 hapmap CEU samples, 47K expression, 4mm SNP
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2025-04-22 |
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bioconductor-yrimulti
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public |
support for expression, methylation, DHS, VCF for YRI
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2025-04-22 |
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bioconductor-dsqtl
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public |
dsQTL, data excerpt from Degner et al. 2012 Nature letter
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2025-04-22 |
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bioconductor-ceu1kgv
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public |
expression + genotype on 79 unrelated CEU individuals
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2025-04-22 |
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bioconductor-clipper
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public |
Gene Set Analysis Exploiting Pathway Topology
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2025-04-22 |
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bioconductor-geneanswers
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public |
Integrated Interpretation of Genes
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2025-04-22 |
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bioconductor-pigengene
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public |
Infers biological signatures from gene expression data
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2025-04-22 |
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bioconductor-mcbiclust
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public |
Massive correlating biclusters for gene expression data and associated methods
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2025-04-22 |
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bioconductor-fastliquidassociation
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public |
functions for genome-wide application of Liquid Association
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2025-04-22 |
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bioconductor-randomwalkrestartmh
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public |
Random walk with restart on multiplex and heterogeneous Networks
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2025-04-22 |
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r-dnet
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public |
The focus of the dnet by Fang and Gough (2014) <doi:10.1186/s13073-014-0064-8> is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
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2025-04-22 |
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bioconductor-appreci8r
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public |
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
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2025-04-22 |
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r-rsnps
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public |
A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), and 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>). Functions are included for searching for 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.
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2025-04-22 |
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bioconductor-metnet
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public |
Inferring metabolic networks from untargeted high-resolution mass spectrometry data
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2025-04-22 |
