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bioconductor-bsseq
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public |
Analyze, manage and store whole-genome methylation data
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2025-04-22 |
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bioconductor-isoformswitchanalyzer
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public |
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
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2025-04-22 |
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bioconductor-drimseq
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public |
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
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2025-04-22 |
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squizz
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public |
Squizz is a sequence/alignment format checker, but it has some conversion capabilities too.
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2025-04-22 |
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watchdog-wms
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public |
Watchdog, a WMS for the automated and distributed analysis of large-scale experimental data. The software is implemented in Java and is thus platform-independent. Main feature include + straightforward processing of replicate data + support for distributed computer systems + remote storage support + customizable error detection + manual intervention into workflow execution + GUI for workflow construction using pre-defined modules + a helper script for creating new module definitions + no restriction to specific programming languages + provides a flexible plugin system for extending without modifying the original sources
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2025-04-22 |
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scanindel
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public |
ScanIndel is a python program to detect indels (insertions and deletions) from NGS data by re-align and de novo assemble soft clipped reads.
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2025-04-22 |
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bioconductor-affyplm
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public |
Methods for fitting probe-level models
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2025-04-22 |
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bioconductor-htsfilter
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public |
Filter replicated high-throughput transcriptome sequencing data
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2025-04-22 |
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tassel
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public |
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
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2025-04-22 |
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bioconductor-recount
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public |
Explore and download data from the recount project
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2025-04-22 |
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cpinsim
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public |
CPINSim is a package for the simulation of protein complex assembly with constrained
protein interaction networks.
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2025-04-22 |
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perl-try-tiny-retry
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public |
Just like Try::Tiny, but with retry instead of try.
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2025-04-22 |
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mykatlas
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public |
Assists in discoveries of antibiotic-resistance with mykrobe
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2025-04-22 |
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ga4ghmongo
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public |
A document based Variant database inspired by ga4gh Variants schema
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2025-04-22 |
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bioconductor-flagme
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public |
Analysis of Metabolomics GC/MS Data
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2025-04-22 |
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rambo-k
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public |
a reference-based tool for rapid and sensitive extraction of one organism´s reads from a mixed NGS dataset
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2025-04-22 |
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fcsparser
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public |
A python package for reading raw fcs files
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2025-04-22 |
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toulligqc
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public |
A post sequencing QC tool for Oxford Nanopore sequencers.
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2025-04-22 |
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bioconductor-snplocs.hsapiens.dbsnp144.grch38
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public |
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
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2025-04-22 |
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progressivemauve
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public |
progressiveMauve computes multiple genome alignment with gene gain, loss and rearrangement
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2025-04-22 |
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nanopore_simulation
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public |
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
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2025-04-22 |
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hg-color
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public |
HG-CoLoR (Hybrid Graph for the error Correction of Long Reads) is a hybrid method for the error correction of long reads that follows the main idea from NaS to produce corrected long reads from assemblies of related accurate short reads.
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2025-04-22 |
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bioconductor-splatter
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public |
Simple Simulation of Single-cell RNA Sequencing Data
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2025-04-22 |
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mockinbird
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public |
A fully automatic and reproducible PAR-CLIP analysis pipeline
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2025-04-22 |
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smina
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public |
A fork of AutoDock Vina that is customized to better support scoring function development and high-performance energy minimization.
|
2025-04-22 |
