| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mockinbird | public | A fully automatic and reproducible PAR-CLIP analysis pipeline | 2025-04-22 |
| smina | public | A fork of AutoDock Vina that is customized to better support scoring function development and high-performance energy minimization. | 2025-04-22 |
| asn2gb | public | asn2gb converts ASN1 format sequence records to Genbank format | 2025-04-22 |
| sibelia | public | Genome comparison via de Bruijn graph. | 2025-04-22 |
| structureharvester | public | structureHarvester.py is a Python script capable of extracting all the relevant data from STRUCTURE results files | 2025-04-22 |
| linkage2allegro | public | Converts between the output linkage formats of Merlin, Simwalk, Genehunter, and Swiftlink into Allegro. | 2025-04-22 |
| ragout | public | Chromosome-level scaffolding using multiple references | 2025-04-22 |
| python-mailund-newick | public | Another python module to read and write the Newick format | 2025-04-22 |
| python-newick | public | A python module to read and write the Newick format. | 2025-04-22 |
| shortreadconnector | public | Short read connector enables the comparisons of two read sets | 2025-04-22 |
| r-gkmsvm | public | Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. | 2025-04-22 |
| pgsa | public | Pseudogenome Suffix Array is a compact index for collections of reads from sequencing. | 2025-04-22 |
| vcfpy | public | Python 3 VCF library with good support for both reading and writing | 2025-04-22 |
| isatools | public | Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments | 2025-04-22 |
| fastindep | public | A fast random heuristic algorithm for identifying large sets of unrelated individuals and unrelated markers | 2025-04-22 |
| bioconductor-derfinderplot | public | Plotting functions for derfinder | 2025-04-22 |
| pubchempy | public | A simple Python wrapper around the PubChem PUG REST API. | 2025-04-22 |
| ucsc-expmatrixtobarchartbed | public | Generate a barChart bed6+5 file from a matrix, meta data, and coordinates. | 2025-04-22 |
| ucsc-calc | public | Little command line calculator | 2025-04-22 |
| ucsc-ave | public | Compute average and basic stats | 2025-04-22 |
| cgat-pipelines-nosetests | public | Metapackage to test CGAT Pipelines | 2025-04-22 |
| cgat-scripts-nosetests | public | Computational Genomics Analysis Toolkit | 2025-04-22 |
| bioconductor-egsea | public | Ensemble of Gene Set Enrichment Analyses | 2025-04-22 |
| bioconductor-egseadata | public | Gene set collections for the EGSEA package | 2025-04-22 |
| bioconductor-padog | public | Pathway Analysis with Down-weighting of Overlapping Genes (PADOG) | 2025-04-22 |
