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conterminator
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public |
Conterminator: software to detect contamination in large sequence sets
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2023-06-16 |
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pgx-variant-tools
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public |
This library contains various methods and utilities for the calling and manipulation of normalized variants.
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2023-06-16 |
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enrichm
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public |
EnrichM is a toolbox for comparing the functional composition of population genomes
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2023-06-16 |
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kofamscan
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public |
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
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2023-06-16 |
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galaxy-util
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public |
Galaxy Generic Utilities
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2023-06-16 |
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galaxy-tool-util
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public |
Galaxy Tool and Tool Dependency Utilities
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2023-06-16 |
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galaxy-containers
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public |
Galaxy Container Modeling and Interaction Abstractions
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2023-06-16 |
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r-qtl2
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public |
R/qtl2 provides a set of tools to perform quantitative trait locus (QTL) analysis in experimental crosses. It is a reimplementation of the R/qtl package to better handle high-dimensional data and complex cross designs. This package is designed to make it easy to install and load multiple R/qtl2 packages in a single step. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.
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2023-06-16 |
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crisprbact
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public |
Tools to design and analyse CRISPRi experiments
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2023-06-16 |
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perl-text-csv_xs
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public |
Text::CSV_XS - comma-separated values manipulation routines
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2023-06-16 |
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clan
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public |
CLAN - the CrossLinked reads ANalysis tool
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2023-06-16 |
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vsnp
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public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
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2023-06-16 |
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chira
|
public |
An integrated framework for annotation and visualization of chimeric reads.
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2023-06-16 |
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locus_processing
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public |
Tools for working with locus definition files
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2023-06-16 |
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pp-sketchlib
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public |
Library of sketching functions used by PopPUNK
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2023-06-16 |
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quantwiz-iq
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public |
QuantWiz-IQ is a tool for reporter based MS/MS quantitation using iTRAQ or TMT tags from shotgun proteomics experiments.
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2023-06-16 |
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biotdg
|
public |
Bioinformatics Test Data Generator
|
2023-06-16 |
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imsindel
|
public |
An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
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2023-06-16 |
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chromosight
|
public |
Detect loops (and other patterns) in Hi-C contact maps.
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2023-06-16 |
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interleafq
|
public |
Interleave and deinterleave FASTQ files
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2023-06-16 |
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shannon_cpp
|
public |
shannon_cpp is command line tool for denovo rna assembly
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2023-06-16 |
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hypo
|
public |
Super Fast and Accurate Polisher for Long Read Genome Assemblies.
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2023-06-16 |
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libis
|
public |
Low input Bisulfite sequencing alignment
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2023-06-16 |
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rsat-core
|
public |
Detection of regulatory signals in non-coding sequences.
|
2023-06-16 |
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haploconduct
|
public |
HaploConduct is a package designed for reconstruction of individual haplotypes from next generation sequencing data, in particular Illumina. It provides two methods, SAVAGE and POLYTE, which can be run through the haploconduct wrapper.
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2023-06-16 |
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perl-math-matrixreal
|
public |
Manipulate NxN matrices of real numbers
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2023-06-16 |
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perl-math-matrix
|
public |
Multiply and invert Matrices
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2023-06-16 |
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cameo
|
public |
cameo - computer aided metabolic engineering & optimization
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2023-06-16 |
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openms-tools
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
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2023-06-16 |
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luciphor2
|
public |
Luciphor2 performs PTM-site localization on MS/MS data
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2023-06-16 |
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libis_moabs
|
public |
Low input Bisulfite sequencing alignment
|
2023-06-16 |
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ncbimeta
|
public |
Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
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2023-06-16 |
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hypercluster
|
public |
A package for automatic clustering hyperparameter optmization
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2023-06-16 |
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perl-fastx-abi
|
public |
FASTX::Abi - Read Sanger trace file (.ab1 chromatograms) in FASTQ format. For traces called with hetero option, the ambiguities will be split into two sequences to allow usage from NGS tools that usually do not understand IUPAC ambiguities.
|
2023-06-16 |
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gnomic
|
public |
A grammar for describing microbial genotypes and phenotypes
|
2023-06-16 |
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ncbitk
|
public |
A tool kit for accessing NCBI's GenBank
|
2023-06-16 |
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escher
|
public |
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Metabolic Pathways
|
2023-06-16 |
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macaron
|
public |
Multi-bAse Codon-Associated variant Re-annotatiON
|
2023-06-16 |
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perl-bio-trace-abif
|
public |
Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files
|
2023-06-16 |
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oncogemini
|
public |
OncoGEMINI is an adaptation of GEMINI intended for the improved identification of biologically and clincally relevant tumor variants from multi-sample and longitudinal tumor sequencing data
|
2023-06-16 |
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referenceseeker
|
public |
Rapid determination of appropriate reference genomes.
|
2023-06-16 |
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haplotype-lso
|
public |
Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data
|
2023-06-16 |
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medusa
|
public |
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
|
2023-06-16 |
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bolt
|
public |
A variant caller for short-read sequencing data
|
2023-06-16 |
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scvelo
|
public |
single-cell RNA velocity generalized to transient cell states
|
2023-06-16 |
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tetranscripts
|
public |
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
|
2023-06-16 |
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assemblytics
|
public |
analyze a genome assembly by comparing it to a reference genome
|
2023-06-16 |
|
omssa
|
public |
Open Mass Spectrometry Search Algorithm (OMSSA)
|
2023-06-16 |
|
scpred-cli
|
public |
A set of command-line wrappers for the core functions in the scPred package.
|
2023-06-16 |
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fastml
|
public |
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences
|
2023-06-16 |
