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bioconda / packages / perl-fastx-abi 1.0.1

FASTX::Abi - Read Sanger trace file (.ab1 chromatograms) in FASTQ format. For traces called with hetero option, the ambiguities will be split into two sequences to allow usage from NGS tools that usually do not understand IUPAC ambiguities.

Installers

  • noarch v1.0.1

conda install

To install this package run one of the following:
conda install bioconda::perl-fastx-abi

Description

This module reads a Sanger trace (chromatogram). If the chromatogram was saved in "hetero" mode, that is allowing IUPAC ambiguities in the basecalling, the module will return two (unphased) sequences in standard "ACGT" alphabet.


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