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bioconda / packages / kofamscan 1.3.0

KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam

Installers

  • noarch v1.3.0

conda install

To install this package run one of the following:
conda install bioconda::kofamscan

Description

KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam (a customized HMM database of KEGG Orthologs (KOs)). K number assignments with scores above the predefined thresholds for individual KOs are more reliable than other proposed assignments. Such high score assignments are highlighted with asterisks '*' in the output. The K number assignments facilitate the interpretation of the annotation results by linking the user's sequence data to the KEGG pathways and EC numbers.


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