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tttrlib
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public |
A file format agnostic library for time-resolved imaging and spectroscopic data.
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2025-03-25 |
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biobb_mem
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public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2025-03-25 |
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gzrt
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public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
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2025-03-25 |
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lamps
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public |
Liverpool Annotation of metabolites using Mass Spectrometry
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2025-03-25 |
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r-remapenrich
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public |
Bioinformatics tools to compute statistical enrichment of geonomic regions for ReMap peaks
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2025-03-25 |
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minimac4
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public |
Computationally efficient genotype imputation
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2025-03-25 |
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halfdeep
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public |
Automated detection of intervals covered at half depth by sequenced reads.
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2025-03-25 |
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orthodb
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public |
Interface to OrthoDB REST API.
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2025-03-25 |
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gaftools
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public |
gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format
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2025-03-25 |
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fc
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public |
Accurate Assembly of Full-length Consensus for Viral Quasispecies.
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2025-03-25 |
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bubblegun
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public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
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2025-03-25 |
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rotate
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public |
Simple program to rotate a circular sequence to start at a given position or string.
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2025-03-25 |
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reseek
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public |
Protein structure alignment and search algorithm.
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2025-03-25 |
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ntstat
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public |
a toolkit for statistical analysis of k-mer frequency and depth
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2025-03-25 |
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eagle2
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public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
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2025-03-25 |
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meta-neuro
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public |
Medial Tractography Analysis (MeTA)
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2025-03-25 |
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msa4u
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public |
A simple visualisation tool for Multiple Sequence Alignment.
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2025-03-25 |
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amplici
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public |
AmpliCI: Cluster amplicon sequences in a fastq file with or without UMIs.
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2025-03-25 |
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liana
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public |
LIANA+: a one-stop-shop framework for cell-cell communication
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2025-03-25 |
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phenograph
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public |
Graph-based clustering for high-dimensional single-cell data.
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2025-03-25 |
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stxtyper
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public |
Accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
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2025-03-25 |
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jarvis3
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public |
Improved encoder for genomic sequences.
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2025-03-25 |
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deepchopper-cli
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public |
A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
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2025-03-25 |
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pyscenic
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public |
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments.
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2025-03-25 |
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corneto
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public |
CORNETO: A Unified Framework for Omics-Driven Network Inference
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2025-03-25 |
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cell2cell
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public |
Inferring cell-cell interactions from transcriptomes with cell2cell
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2025-03-25 |
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coptr
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public |
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
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2025-03-25 |
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deepchopper
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public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
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2025-03-25 |
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libgff
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public |
A simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase.
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2025-03-25 |
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mutyper
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public |
A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs.
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2025-03-25 |
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flexiformatter
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public |
Moving flexiplex barcode and UMI to bam tags
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2025-03-25 |
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svision-pro
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public |
Neural-network-based long-read SV caller.
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2025-03-25 |
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ggcat
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public |
Compacted and colored de Bruijn graph construction and querying.
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2025-03-25 |
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steamboat
|
public |
A collection of tools/scripts for microbial bioinformatics
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2025-03-25 |
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mikrokondo-tools
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public |
A collection of utilities to make using the mikrokondo pipeline easier
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2025-03-25 |
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pegas
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public |
PeGAS is a Snakemake pipeline for genome analysis
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2025-03-25 |
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pykofamsearch
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public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2025-03-25 |
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r-saccharis
|
public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
|
2025-03-25 |
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zamp
|
public |
zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
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2025-03-25 |
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genodsp
|
public |
General workbench for processing signals along genomic (chromosomal) intervals
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2025-03-25 |
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telosearchlr
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public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
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2025-03-25 |
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snipe
|
public |
SRA-Scale sequence QC and analysis
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2025-03-25 |
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pyhmmsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
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2025-03-25 |
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splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
|
2025-03-25 |
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fastplong
|
public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
|
2025-03-25 |
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gene-trajectory-python
|
public |
Compute gene trajectories
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2025-03-25 |
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inmoose
|
public |
InMoose is the Integrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
|
2025-03-25 |
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cloudspades
|
public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
|
2025-03-25 |
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vclust
|
public |
Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.
|
2025-03-25 |
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fmsi
|
public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
|
2025-03-25 |
