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inmoose
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public |
InMoose is the Integrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
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2025-03-25 |
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cloudspades
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public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
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2025-03-25 |
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vclust
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public |
Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.
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2025-03-25 |
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fmsi
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public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
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2025-03-25 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
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2025-03-25 |
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r-archr
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public |
This package is designed to streamline scATAC analyses in R.
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2025-03-25 |
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longcallr_nn
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public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
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2025-03-25 |
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gafpack
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public |
Convert alignments to pangenome variation graphs to coverage maps
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2025-03-25 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2025-03-25 |
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meta_eukaryome_detect
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public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
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2025-03-25 |
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devider
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public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs.
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2025-03-25 |
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cosigt
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public |
Cosigt (COsine SImilarity-based GenoTyper)
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2025-03-25 |
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sfold
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public |
Software for Statistical Folding of Nucleic Acids
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2025-03-25 |
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gfainject
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public |
Inject alignment into pangenome graphs
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2025-03-25 |
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sipros
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public |
Tools for stable isotopic mass spectrometry-based metaproteomics
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2025-03-25 |
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lz-ani
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public |
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
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2025-03-25 |
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patchify
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public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
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2025-03-25 |
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tefinder
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public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
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2025-03-25 |
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snk
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public |
A Snakemake CLI and Workflow Management System.
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2025-03-25 |
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snk-cli
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public |
Dynamically generate CLIs from Snakemake configuration files
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2025-03-25 |
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mutamr
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public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
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2025-03-25 |
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mini3di
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public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
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2025-03-25 |
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heliano
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public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
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2025-03-25 |
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get_mnv
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public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
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2025-03-25 |
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hmftools-peach
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public |
Infer haplotypes for interpretation in a pharmacogenomic context
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2025-03-25 |
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pydustmasker
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public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
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2025-03-25 |
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rukki
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public |
Extracting paths from assembly graphs.
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2025-03-25 |
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minimizers
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public |
Minimizers extraction from fasta files.
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2025-03-25 |
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dbghaplo
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public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
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2025-03-25 |
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spreadgltools
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public |
Visualising pathogen dispersal in a high-performance browser application
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2025-03-25 |
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sizemeup
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public |
A simple tool to determine the genome size of an organism
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2025-03-25 |
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pgrc
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public |
A tool for compressing the DNA stream of FASTQ datasets.
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2025-03-25 |
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consensify
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public |
A method for generating a consensus pseudohaploid genome sequence
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2025-03-25 |
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moni
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public |
A Pangenomics Index for Finding MEMs
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2025-03-25 |
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mview
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public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
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2025-03-25 |
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hsdecipher
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public |
Pipeline for the downstream analysis of highly similar duplicate genes
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2025-03-25 |
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hsdfinder
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public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
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2025-03-25 |
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msisensor-rna
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public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
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2025-03-25 |
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eukfinder
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public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
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2025-03-25 |
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busco_phylogenomics
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public |
Utility script to construct species phylogenies using BUSCO proteins.
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2025-03-25 |
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scarches
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public |
Transfer learning with Architecture Surgery on Single-cell data
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2025-03-25 |
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tiberius
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public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
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2025-03-25 |
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seq-hasher
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public |
Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations
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2025-03-25 |
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tr-trimmer
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public |
Identify and trim terminal repeats from sequences in FASTA files
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2025-03-25 |
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gbintk
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public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
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2025-03-25 |
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hylight
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public |
Strain aware assembly of low coverage metagenomes.
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2025-03-25 |
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transanno
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public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
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2025-03-25 |
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hackgap
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public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
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2025-03-25 |
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afpdb
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public |
A Numpy-based PDB structure manipulation package
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2025-03-25 |
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dockq
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public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
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2025-03-25 |
