|
dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2025-03-25 |
|
sam2pairwise
|
public |
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read
|
2025-03-25 |
|
schpl
|
public |
Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets
|
2025-03-25 |
|
quota_anchor
|
public |
Strand and WGD aware syntenic gene identification
|
2025-03-25 |
|
pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2025-03-25 |
|
lib-pod5
|
public |
Python bindings for the POD5 file format.
|
2025-03-25 |
|
strainy
|
public |
Assembly-based metagenomic strain phasing using long reads
|
2025-03-25 |
|
piawka
|
public |
The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data
|
2025-03-25 |
|
orthologer
|
public |
Establish orthology among fasta files.
|
2025-03-25 |
|
poplddecay
|
public |
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format (VCF) files.
|
2025-03-25 |
|
kegalign-full
|
public |
KegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2025-03-25 |
|
pango-collapse
|
public |
Collapse Pango sublineages up to user defined parent lineages.
|
2025-03-25 |
|
blast2galaxy
|
public |
A Python package with a CLI and API to perform BLAST queries against Galaxy servers
|
2025-03-25 |
|
r-mams
|
public |
R package for Matrix and Analysis Metadata Standards.
|
2025-03-25 |
|
jclusterfunk
|
public |
A command line tool with a bunch of functions for trees
|
2025-03-25 |
|
spatialleiden
|
public |
Implementation of multiplex Leiden for analysis of spatial omics data.
|
2025-03-25 |
|
pling
|
public |
Pling computes the rearrangement distance between plasmids and clusters on their basis
|
2025-03-25 |
|
bwa-aln-interactive
|
public |
Version of the BWA aln read mapper for interactive alignment.
|
2025-03-25 |
|
tribal
|
public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
|
2025-03-25 |
|
popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2025-03-25 |
|
biobox_add_taxid
|
public |
CAMI amber utility script for adding the taxid output from GTDB and BAT
|
2025-03-25 |
|
prymer
|
public |
Python Primer Design Library
|
2025-03-25 |
|
snakemake-executor-plugin-tes
|
public |
A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster.
|
2025-03-25 |
|
r-buencolors
|
public |
R utility package for color mapping and plot aesthetics.
|
2025-03-25 |
|
mquad
|
public |
MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data.
|
2025-03-25 |
|
bbmix
|
public |
BBMix: inference of beta-binomial mixture model
|
2025-03-25 |
|
miniprot-boundary-scorer
|
public |
Miniprot boundary scorer parses introns, starts, stops and exons from miniprot's alignment output and scores them
|
2025-03-25 |
|
xclone
|
public |
Inference of clonal Copy Number Alterations in single cells.
|
2025-03-25 |
|
chromsize
|
public |
just get your chrom sizes
|
2025-03-25 |
|
cyrcular
|
public |
Tool for calling circles from nanopore reads
|
2025-03-25 |
|
r-mspbwt
|
public |
Multi Symbol Positional Burrows Wheeler Transform
|
2025-03-25 |
|
alen
|
public |
Simple terminal sequence alignment viewer
|
2025-03-25 |
|
nanocount
|
public |
Transcript abundance estimation from Nanopore *direct-RNA sequencing* datasets
|
2025-03-25 |
|
tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
|
2025-03-25 |
|
nedbit-features-calculator
|
public |
Network diffusion and biology-informed topological features
|
2025-03-25 |
|
apu-label-propagation
|
public |
Adaptive Positive-Unlabelled label propagation
|
2025-03-25 |
|
flexi-formatter
|
public |
Moving flexiplex barcode and UMI to bam tags
|
2025-03-25 |
|
sainsc
|
public |
Segmentation-free Analysis of In Situ Capture data.
|
2025-03-25 |
|
vitap
|
public |
Viral Taxonomic Assignment Pipeline
|
2025-03-25 |
|
phyloaln
|
public |
PhyloAln: a reference-based multiple sequence alignment tool for phylogeny
|
2025-03-25 |
|
dna-nn
|
public |
Model and predict short DNA sequence features with neural networks.
|
2025-03-25 |
|
ropebwt3
|
public |
Constructs the FM-index of a large DNA sequence set and searches for matches against the FM-index.
|
2025-03-25 |
|
sdust
|
public |
Symmetric DUST for finding low-complexity regions in DNA sequences.
|
2025-03-25 |
|
cryptkeeper
|
public |
A negative design tool for predicting and visualizing undesired gene expression
|
2025-03-25 |
|
pdbx
|
public |
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
|
2025-03-25 |
|
acms
|
public |
Ambivalent Covariance Models (aCMs) are our prototypic suggestion to extend CMs with more than one consensus structure.
|
2025-03-25 |
|
dingii
|
public |
Computing the Rearrangement Distance of Natural Genomes.
|
2025-03-25 |
|
rhotermpredict
|
public |
RhoTermPredict (Barrick Lab Fork)
|
2025-03-25 |
|
promotercalculator
|
public |
Promoter-Calculator (Barrick Lab Fork)
|
2025-03-25 |
|
cytotrace2-python
|
public |
CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
|
2025-03-25 |
