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bioconda/deepchopper-cli

deepchopper-cli

Community

A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::deepchopper-cli

Usage Tracking

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Description

DeepChopper is a genomic language model designed to identify artificial sequences. It provides functionality for encoding FASTQ files, making predictions, and chopping sequences.

About

Summary

A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.

Last Updated

Nov 19, 2025 at 00:15

License

Apache-2.0

Total Downloads

4.1K

Supported Platforms

linux-64
linux-aarch64
macOS-64
macOS-arm64

Home

https://github.com/ylab-hi/DeepChopper

GitHub Repository

https://github.com/ylab-hi/DeepChopper

Documentation

https://github.com/ylab-hi/DeepChopper