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snakemake-storage-plugin-sftp
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public |
A Snakemake storage plugin that handles files on an SFTP server.
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2023-12-20 |
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snakemake-executor-plugin-azure-batch
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public |
A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.
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2023-12-20 |
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rappas
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public |
RAPPAS (Rapid Alignment-free Phylogenetic PLacement via Ancestral Sequences) is a program dedicated to Phylogenetic Placement of (meta)genomic reads on a reference tree. As apposed to previous PP programs, RAPPAS is based on the phylo-kmers idea, detailed in tis manuscript and uses a 2 step approach divided into a) the database build, and b) the placement itself. The main advantage of RAPPAS is that it is alignment free, which means that after step (a) (the DB build) is performed, metagenomic reads can be directly placed on a referene tree WITHOUT aligning them to the reference alignment on which the tree was built (as required by other approaches). The second advantage of RAPPAS is its algorithm based on phylo-kmers matches, making its execution time linear with respect to the length of the placed sequences.
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2023-12-20 |
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bioconductor-dce
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public |
Pathway Enrichment Based on Differential Causal Effects
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2023-12-20 |
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igdiscover
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public |
Analyze antibody repertoires and discover new V genes
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2023-12-20 |
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bioconductor-motifbreakr
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public |
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
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2023-12-20 |
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bioconductor-ritan
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public |
Rapid Integration of Term Annotation and Network resources
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2023-12-20 |
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bioconductor-psygenet2r
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public |
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
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2023-12-20 |
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bioconductor-ringo
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public |
R Investigation of ChIP-chip Oligoarrays
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2023-12-19 |
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bioconductor-gesper
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public |
Gene-Specific Phenotype EstimatoR
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2023-12-19 |
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bioconductor-ataccogaps
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public |
Analysis Tools for scATACseq Data with CoGAPS
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2023-12-19 |
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bioconductor-bgeedb
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public |
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
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2023-12-19 |
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bioconductor-cellhts2
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public |
Analysis of cell-based screens - revised version of cellHTS
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2023-12-19 |
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epiweeks
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public |
Epidemiological weeks calculation based on the US CDC (MMWR) and ISO week numbering systems
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2023-12-19 |
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ananse
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public |
ANANSE: ANalysis Algorithm for Networks Specified by Enhancers - Prediction of key transcription factors in cell fate determination using enhancer networks
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2023-12-19 |
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bioconductor-circseqaligntk
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public |
A toolkit for end-to-end analysis of RNA-seq data for circular genomes
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2023-12-19 |
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bioconductor-umi4cats
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public |
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
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2023-12-19 |
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bioconductor-bandle
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public |
An R package for the Bayesian analysis of differential subcellular localisation experiments
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2023-12-18 |
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bioconductor-msbackendrawfilereader
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public |
Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
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2023-12-18 |
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bioconductor-metascope
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public |
Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data
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2023-12-18 |
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bioconductor-chemmineob
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public |
R interface to a subset of OpenBabel functionalities
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2023-12-18 |
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bioconductor-rawrr
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public |
Direct Access to Orbitrap Data and Beyond
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2023-12-18 |
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bioconductor-seqcna
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public |
Copy number analysis of high-throughput sequencing cancer data
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2023-12-17 |
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illumina-utils
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public |
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).
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2023-12-16 |
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bioconductor-microbiomeexplorer
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public |
Microbiome Exploration App
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2023-12-16 |
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bioconductor-chromstar
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public |
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
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2023-12-16 |
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bioconductor-funchip
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public |
Clustering and Alignment of ChIP-Seq peaks based on their shapes
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2023-12-16 |
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bioconductor-rsbml
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public |
R support for SBML, using libsbml
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2023-12-15 |
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bioconductor-single
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public |
Accurate consensus sequence from nanopore reads of a gene library
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2023-12-15 |
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bioconductor-lineagepulse
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public |
Differential expression analysis and model fitting for single-cell RNA-seq data
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2023-12-15 |
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bioconductor-bearscc
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public |
BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)
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2023-12-15 |
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bioconductor-scddboost
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public |
A compositional model to assess expression changes from single-cell rna-seq data
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2023-12-15 |
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bioconductor-genestructuretools
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public |
Tools for spliced gene structure manipulation and analysis
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2023-12-15 |
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bioconductor-htseqgenie
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public |
A NGS analysis pipeline.
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2023-12-15 |
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bioconductor-scds
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public |
In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data
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2023-12-15 |
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bioconductor-destiny
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public |
Creates diffusion maps
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2023-12-15 |
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bioconductor-rocpai
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public |
Receiver Operating Characteristic Partial Area Indexes for evaluating classifiers
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2023-12-15 |
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bioconductor-cytofpower
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public |
Power analysis for CyTOF experiments
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2023-12-15 |
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bioconductor-flames
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public |
FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data
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2023-12-15 |
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gogstools
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public |
GenOuest tools for manipulating Official Gene Sets
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2023-12-14 |
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methylpy
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public |
Bisulfite sequencing data processing and differential methylation analysis
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2023-12-14 |
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sequana
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public |
A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis
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2023-12-13 |
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craq
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public |
Pinpoint assembly errors for genomic assessing and correcting.
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2023-12-13 |
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bioconductor-maqcsubsetilm
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public |
MAQC data subset for the Illumina platform
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2023-12-13 |
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bioconductor-nanotator
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public |
Next generation structural variant annotation and classification
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2023-12-13 |
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bioconductor-brainflowprobes
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public |
Plots and annotation for choosing BrainFlow target probe sequence
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2023-12-13 |
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bioconductor-yapsa
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public |
Yet Another Package for Signature Analysis
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2023-12-13 |
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bioconductor-dmrcatedata
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public |
Data Package for DMRcate
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2023-12-12 |
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bioconductor-netomics
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public |
Multi-Omics (time-course) network-based integration and interpretation
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2023-12-12 |
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bioconductor-macat
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public |
MicroArray Chromosome Analysis Tool
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2023-12-12 |
