bioconda / packages / bioconductor-umi4cats 1.4.0

UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Installers

conda install

  • noarch  v1.4.0
To install this package with conda run:
conda install -c bioconda bioconductor-umi4cats

Description

UMI-4C is a technique that allows characterization of 3D chromatin interactions with a bait of interest, taking advantage of a sonication step to produce unique molecular identifiers (UMIs) that help remove duplication bias, thus allowing a better differential comparsion of chromatin interactions between conditions. This package allows processing of UMI-4C data, starting from FastQ files provided by the sequencing facility. It provides two statistical methods for detecting differential contacts and includes a visualization function to plot integrated information from a UMI-4C assay.


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