| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pantax | public | Strain-level metagenomic profiling using pangenome graphs with PanTax | 2025-07-22 |
| pilea | public | Pilea: profiling bacterial growth dynamics from metagenomes with sketching | 2025-07-22 |
| svtopo | public | Complex structural variant visualization for HiFi sequencing data: extraction tool | 2025-07-22 |
| nextpolish | public | Fast and accurately polish the genome generated by long reads | 2025-07-22 |
| r-bpcells | public | Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds. | 2025-07-22 |
| svtopovz | public | Complex structural variant visualization for HiFi sequencing data: plotting tool. | 2025-07-22 |
| cooler | public | Sparse binary format for genomic interaction matrices. | 2025-07-22 |
| nextpolish2 | public | Repeat-aware polishing genomes assembled using HiFi long reads. | 2025-07-21 |
| bbmap | public | BBMap is a short read aligner, as well as various other bioinformatic tools. | 2025-07-21 |
| bio-unicorn | public | A tool for computing statistics on short read alignments. | 2025-07-21 |
| aster | public | Accurate Species Tree EstimatoR series; a family of optimation algorithms for species tree inference implemented in C++. | 2025-07-21 |
| gw | public | View genomic sequencing data and vcf files | 2025-07-21 |
| squigualiser | public | Visualise ONT raw signals | 2025-07-21 |
| htseq | public | HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments. | 2025-07-21 |
| vamos | public | VNTR annotation using efficient motif selection. | 2025-07-21 |
| gnparser | public | GNparser normalises scientific names and extracts their semantic elements. | 2025-07-21 |
| rdeval | public | A general purpose, multithreaded read analysis and manipulation tool. | 2025-07-21 |
| bioconductor-hmmcopy | public | Copy number prediction with correction for GC and mappability bias for HTS data | 2025-07-21 |
| grz-check | public | grz-check is a tool for validating incoming files of Modellvorhaben ยง64e submissions to Genomrechenzentren (GRZ) in Germany. | 2025-07-21 |
| ensemblcov | public | Parallel threaded variant linker. | 2025-07-21 |
| hmftools-neo | public | Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood. | 2025-07-21 |
| hmftools-sage | public | SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage. | 2025-07-21 |
| hmftools-linx | public | LINX is an annotation, interpretation and visualisation tool for structural variants. | 2025-07-21 |
| hmftools-purple | public | PURPLE is a purity ploidy estimator for tumor samples. | 2025-07-21 |
| hmftools-bam-tools | public | Rapidly process BAMs for various tasks. | 2025-07-21 |
