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bioconductor-m3drop

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Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-m3drop

Usage Tracking

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Description

This package fits a model to the pattern of dropouts in single-cell RNASeq data. This model is used as a null to identify significantly variable (i.e. differentially expressed) genes for use in downstream analysis, such as clustering cells. Also includes an method for calculating exact Pearson residuals in UMI-tagged data using a library-size aware negative binomial model.

About

Summary

Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

Last Updated

Dec 23, 2024 at 05:02

License

GPL (>=2)

Total Downloads

42.5K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.6.0
macOS-64 Last supported version: 1.6.0