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bioconda / packages / bioconductor-m3drop 1.32.0

Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.32.0
  • osx-64 v1.6.0
  • linux-64 v1.6.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-m3drop
conda install bioconda/label/cf201901::bioconductor-m3drop
conda install bioconda/label/gcc7::bioconductor-m3drop

Description

This package fits a model to the pattern of dropouts in single-cell RNASeq data. This model is used as a null to identify significantly variable (i.e. differentially expressed) genes for use in downstream analysis, such as clustering cells. Also includes an method for calculating exact Pearson residuals in UMI-tagged data using a library-size aware negative binomial model.

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