bioconductor-tricycle
tricycle: Transferable Representation and Inference of cell cycle
tricycle: Transferable Representation and Inference of cell cycle
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The package contains functions to infer and visualize cell cycle process using Single Cell RNASeq data. It exploits the idea of transfer learning, projecting new data to the previous learned biologically interpretable space. We provide a pre-learned cell cycle space, which could be used to infer cell cycle time of human and mouse single cell samples. In addition, we also offer functions to visualize cell cycle time on different embeddings and functions to build new reference.
Summary
tricycle: Transferable Representation and Inference of cell cycle
Last Updated
Dec 23, 2024 at 05:10
License
GPL-3
Total Downloads
10.9K
Supported Platforms