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bioconductor-diffbind
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public |
Differential Binding Analysis of ChIP-Seq Peak Data
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2025-11-12 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2025-11-12 |
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bioconductor-copynumber
|
public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
|
2025-11-07 |
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bioconductor-outrider
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public |
OUTRIDER - OUTlier in RNA-Seq fInDER
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2025-10-31 |
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bioconductor-biocgenerics
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public |
S4 generic functions used in Bioconductor
|
2025-10-31 |
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r-structssi
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public |
Performs multiple testing corrections that take specific structure of hypotheses into account.
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2025-10-12 |
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r-sartools
|
public |
Statistical Analysis of RNA-Seq data.
|
2025-10-10 |
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r-spp
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public |
Analysis of ChIP-seq and other functional sequencing data [Kharchenko PV (2008) <DOI:10.1038/nbt.1508>].
|
2025-09-16 |
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r-classdiscovery
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public |
Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
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2025-09-04 |
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bioconductor-motifmatchr
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public |
Fast Motif Matching in R.
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2025-08-28 |
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bioconductor-tfbstools
|
public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis.
|
2025-08-22 |
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bioconductor-cner
|
public |
CNE Detection and Visualization.
|
2025-08-22 |
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bioconductor-chromvar
|
public |
Chromatin Variation Across Regions.
|
2025-08-21 |
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bioconductor-singlecelltk
|
public |
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
|
2025-08-20 |
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bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
|
2025-08-20 |
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r-aroma.affymetrix
|
public |
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
|
2025-08-19 |
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r-aroma.core
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public |
Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
|
2025-08-19 |
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bioconductor-survcomp
|
public |
Performance Assessment and Comparison for Survival Analysis
|
2025-08-12 |
|
bioconductor-hmmcopy
|
public |
Copy number prediction with correction for GC and mappability bias for HTS data
|
2025-07-21 |
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bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-07-17 |
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bioconductor-rbowtie2
|
public |
An R Wrapper for Bowtie2 and AdapterRemoval
|
2025-07-17 |
|
r-rphast
|
public |
Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software (Phylogenetic Analysis with Space/Time Models). It can be used for many types of analysis in comparative and evolutionary genomics, such as estimating models of evolution from sequence data, scoring alignments for conservation or acceleration, and predicting elements based on conservation or custom phylogenetic hidden Markov models. It can also perform many basic operations on multiple sequence alignments and phylogenetic trees.
|
2025-07-08 |
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r-exomedepth
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public |
Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
|
2025-06-30 |
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bioconductor-dmrcate
|
public |
Methylation array and sequencing spatial analysis methods
|
2025-06-29 |
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bioconductor-missmethyl
|
public |
Analysing Illumina HumanMethylation BeadChip Data
|
2025-06-27 |
