| Package Name | Access | Summary | Updated |
|---|---|---|---|
| orthodb | public | Interface to OrthoDB REST API. | 2025-04-22 |
| fc | public | Accurate Assembly of Full-length Consensus for Viral Quasispecies. | 2025-04-22 |
| rotate | public | Simple program to rotate a circular sequence to start at a given position or string. | 2025-04-22 |
| ntstat | public | a toolkit for statistical analysis of k-mer frequency and depth | 2025-04-22 |
| eagle2 | public | The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel. | 2025-04-22 |
| meta-neuro | public | Medial Tractography Analysis (MeTA) | 2025-04-22 |
| msa4u | public | A simple visualisation tool for Multiple Sequence Alignment. | 2025-04-22 |
| amplici | public | AmpliCI: Cluster amplicon sequences in a fastq file with or without UMIs. | 2025-04-22 |
| ampd-up | public | De novo antimicrobial peptide sequence generation with recurrent neural networks | 2025-04-22 |
| doubletdetection | public | Method to detect and enable removal of doublets from single-cell RNA-sequencing. | 2025-04-22 |
| phenograph | public | Graph-based clustering for high-dimensional single-cell data. | 2025-04-22 |
| stxtyper | public | Accurately type both known and unknown Shiga toxin operons from assembled genomic sequence. | 2025-04-22 |
| jarvis3 | public | Improved encoder for genomic sequences. | 2025-04-22 |
| deepchopper-cli | public | A CLI for Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing. | 2025-04-22 |
| pyscenic | public | Python implementation of the SCENIC pipeline for transcription factor inference from single-cell transcriptomics experiments. | 2025-04-22 |
| coptr | public | Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads. | 2025-04-22 |
| deepchopper | public | A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing. | 2025-04-22 |
| mutyper | public | A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs. | 2025-04-22 |
| mikrokondo-tools | public | A collection of utilities to make using the mikrokondo pipeline easier | 2025-04-22 |
| r-saccharis | public | A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language. | 2025-04-22 |
| zamp | public | zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics | 2025-04-22 |
| genodsp | public | General workbench for processing signals along genomic (chromosomal) intervals | 2025-04-22 |
| telosearchlr | public | TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs. | 2025-04-22 |
| snipe | public | SRA-Scale sequence QC and analysis | 2025-04-22 |
| splash | public | Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence. | 2025-04-22 |
