| Package Name | Access | Summary | Updated |
|---|---|---|---|
| cloudspades | public | A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging). | 2025-04-22 |
| fmsi | public | FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform. | 2025-04-22 |
| longcallr_nn | public | longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model. | 2025-04-22 |
| meta_eukaryome_detect | public | Pathogen, Parasite, Eukaryote and Virus detection in metagenomes. | 2025-04-22 |
| devider | public | Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs. | 2025-04-22 |
| sfold | public | Software for Statistical Folding of Nucleic Acids | 2025-04-22 |
| gfainject | public | Inject alignment into pangenome graphs | 2025-04-22 |
| lz-ani | public | Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes | 2025-04-22 |
| patchify | public | A library that helps you split image into small, overlappable patches, and merge patches back into the original image. | 2025-04-22 |
| tefinder | public | Programs for transposable element search and annotation in large eukaryotic genome sequence. | 2025-04-22 |
| snk | public | A Snakemake CLI and Workflow Management System. | 2025-04-22 |
| snk-cli | public | Dynamically generate CLIs from Snakemake configuration files | 2025-04-22 |
| mini3di | public | A NumPy port of the foldseek code for encoding protein structures to 3di. | 2025-04-22 |
| get_mnv | public | Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences. | 2025-04-22 |
| hmftools-peach | public | Infer haplotypes for interpretation in a pharmacogenomic context | 2025-04-22 |
| rukki | public | Extracting paths from assembly graphs. | 2025-04-22 |
| minimizers | public | Minimizers extraction from fasta files. | 2025-04-22 |
| dbghaplo | public | Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph. | 2025-04-22 |
| spreadgltools | public | Visualising pathogen dispersal in a high-performance browser application | 2025-04-22 |
| sizemeup | public | A simple tool to determine the genome size of an organism | 2025-04-22 |
| pgrc | public | A tool for compressing the DNA stream of FASTQ datasets. | 2025-04-22 |
| consensify | public | A method for generating a consensus pseudohaploid genome sequence | 2025-04-22 |
| moni | public | A Pangenomics Index for Finding MEMs | 2025-04-22 |
| mview | public | MView extracts and reformats the results of a sequence database search or multiple alignment. | 2025-04-22 |
| hsdecipher | public | Pipeline for the downstream analysis of highly similar duplicate genes | 2025-04-22 |
