| Package Name | Access | Summary | Updated |
|---|---|---|---|
| maxit | public | MAXIT assists in the processing and curation of macromolecular structure data. | 2025-04-22 |
| usalign | public | Universal structure alignment of monomeric, complex proteins and nucleic acids | 2025-04-22 |
| sam2pairwise | public | sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read | 2025-04-22 |
| schpl | public | Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets | 2025-04-22 |
| strainy | public | Assembly-based metagenomic strain phasing using long reads | 2025-04-22 |
| piawka | public | The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data | 2025-04-22 |
| starcatpy | public | Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs. | 2025-04-22 |
| poplddecay | public | PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format (VCF) files. | 2025-04-22 |
| kegalign-full | public | KegAlign: A Scalable GPU-Based Whole Genome Aligner | 2025-04-22 |
| cnmf | public | Consensus NMF for scRNA-Seq data. | 2025-04-22 |
| r-cobrar | public | COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R | 2025-04-22 |
| pango-collapse | public | Collapse Pango sublineages up to user defined parent lineages. | 2025-04-22 |
| blast2galaxy | public | A Python package with a CLI and API to perform BLAST queries against Galaxy servers | 2025-04-22 |
| r-mams | public | R package for Matrix and Analysis Metadata Standards. | 2025-04-22 |
| jclusterfunk | public | A command line tool with a bunch of functions for trees | 2025-04-22 |
| bwa-aln-interactive | public | Version of the BWA aln read mapper for interactive alignment. | 2025-04-22 |
| tribal | public | TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data. | 2025-04-22 |
| popoolation2 | public | PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. | 2025-04-22 |
| biobox_add_taxid | public | CAMI amber utility script for adding the taxid output from GTDB and BAT | 2025-04-22 |
| prymer | public | Python Primer Design Library | 2025-04-22 |
| snakemake-executor-plugin-tes | public | A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster. | 2025-04-22 |
| r-buencolors | public | R utility package for color mapping and plot aesthetics. | 2025-04-22 |
| mquad | public | MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data. | 2025-04-22 |
| bbmix | public | BBMix: inference of beta-binomial mixture model | 2025-04-22 |
| xclone | public | Inference of clonal Copy Number Alterations in single cells. | 2025-04-22 |
