|
amira
|
public |
A tool to detect acquired AMR genes directly from long read sequencing data.
|
2025-08-04 |
|
krakentools
|
public |
KrakenTools scripts for analysis of Kraken/KrakenUniq/Kraken2/Bracken results
|
2025-08-02 |
|
perl-bio-samtools
|
public |
Read SAM/BAM files
|
2025-08-01 |
|
enabrowsertools
|
public |
enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily.
|
2025-08-01 |
|
samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2025-08-01 |
|
perl-html-tidy
|
public |
(X)HTML validation in a Perl object
|
2025-08-01 |
|
rtk
|
public |
rtk - rarefaction toolkit for OTU tables
|
2025-08-01 |
|
ontime
|
public |
Extract subsets of ONT (Nanopore) reads based on time
|
2025-08-01 |
|
impg
|
public |
impg: implicit pangenome graphs.
|
2025-08-01 |
|
emblmygff3
|
public |
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
|
2025-08-01 |
|
ngs-bits
|
public |
Short-read sequencing tools
|
2025-08-01 |
|
clair3-illumina
|
public |
Clair3 with libraries to support variant calling using Illumina short-reads. Version in sync with Clair3.
|
2025-08-01 |
|
octopusv
|
public |
OctopusV: Advanced Structural Variant Analysis Toolkit.
|
2025-08-01 |
|
relecov-tools
|
public |
Tools for managing and processing of relecov data.
|
2025-08-01 |
|
clair3
|
public |
Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
|
2025-08-01 |
|
seqfu
|
public |
DNA sequence utilities
|
2025-08-01 |
|
oligomap
|
public |
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.
|
2025-08-01 |
|
stereogene
|
public |
StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data
|
2025-08-01 |
|
sorted_nearest
|
public |
Find nearest interval.
|
2025-08-01 |
|
metabolishmm
|
public |
Constructing phylogenies and performing functional annotations with HMM markers.
|
2025-08-01 |
|
ngseqbasic
|
public |
Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command.
|
2025-08-01 |
|
geno2phenotb
|
public |
Prediction of Mycobacterium tuberculosis drug resistance from WGS data
|
2025-08-01 |
|
tortoize
|
public |
Application to calculate ramachandran z-scores
|
2025-08-01 |
|
tgv
|
public |
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
|
2025-08-01 |
|
bioemu
|
public |
Biomolecular emulator for scalable emulation of protein equilibrium ensembles with generative deep learning
|
2025-08-01 |
