|
hmftools-peach
|
public |
Infer haplotypes for interpretation in a pharmacogenomic context
|
2025-04-22 |
|
hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-04-22 |
|
pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2025-04-22 |
|
rukki
|
public |
Extracting paths from assembly graphs.
|
2025-04-22 |
|
minimizers
|
public |
Minimizers extraction from fasta files.
|
2025-04-22 |
|
dbghaplo
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
|
2025-04-22 |
|
spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2025-04-22 |
|
sizemeup
|
public |
A simple tool to determine the genome size of an organism
|
2025-04-22 |
|
pgrc
|
public |
A tool for compressing the DNA stream of FASTQ datasets.
|
2025-04-22 |
|
consensify
|
public |
A method for generating a consensus pseudohaploid genome sequence
|
2025-04-22 |
|
moni
|
public |
A Pangenomics Index for Finding MEMs
|
2025-04-22 |
|
mview
|
public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
|
2025-04-22 |
|
hsdecipher
|
public |
Pipeline for the downstream analysis of highly similar duplicate genes
|
2025-04-22 |
|
hsdfinder
|
public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
|
2025-04-22 |
|
msisensor-rna
|
public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
|
2025-04-22 |
|
eukfinder
|
public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
|
2025-04-22 |
|
busco_phylogenomics
|
public |
Utility script to construct species phylogenies using BUSCO proteins.
|
2025-04-22 |
|
scarches
|
public |
Transfer learning with Architecture Surgery on Single-cell data
|
2025-04-22 |
|
tiberius
|
public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
|
2025-04-22 |
|
seq-hasher
|
public |
Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations
|
2025-04-22 |
|
tr-trimmer
|
public |
Identify and trim terminal repeats from sequences in FASTA files
|
2025-04-22 |
|
gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2025-04-22 |
|
hylight
|
public |
Strain aware assembly of low coverage metagenomes.
|
2025-04-22 |
|
transanno
|
public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
|
2025-04-22 |
|
hackgap
|
public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
|
2025-04-22 |
