DNA sequence utilities (N50, de/interleave FASTQ, grep etc.)


conda install

  • noarch  v0.6.0
To install this package with conda run:
conda install -c bioconda seqfu


A collection of utilities to work with FASTX (FASTA or FASTQ) files using the FASTX::Reader module that accepts gzipped input. 'n50' will calculate N50, minimum, maximum and total size of the sequences in one or more files, supporting CSV, TSV, JSON and screen friendly output. 'interleafq' allows to interleave or deinterleave paired-end sequences.

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