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bioconda / packages / clair3

Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

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Type Size Name Uploaded Downloads Labels
conda 208.4 MB | linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2  3 months and 27 days ago 1034 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2  5 months and 12 days ago 319 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2  6 months and 15 days ago 782 main
conda 208.4 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2  6 months and 23 days ago 178 main
conda 208.3 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2  6 months and 29 days ago 542 main
conda 208.2 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2  7 months and 15 days ago 265 main
conda 201.6 MB | linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2  8 months and 8 days ago 618 main
conda 201.5 MB | linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2  11 months and 4 days ago 939 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2  1 year and 1 month ago 1054 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2  1 year and 3 months ago 412 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2  1 year and 4 months ago 268 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2  1 year and 4 months ago 96 main
conda 201.5 MB | linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2  1 year and 5 months ago 1333 main
conda 201.5 MB | linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2  1 year and 6 months ago 1352 main
conda 142.2 MB | linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2  1 year and 6 months ago 1371 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2  1 year and 8 months ago 1505 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2  1 year and 8 months ago 157 main
conda 142.2 MB | linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2  2 years and 1 month ago 2549 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2  2 years and 2 months ago 162 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2  2 years and 3 months ago 291 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2  2 years and 3 months ago 134 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2  2 years and 3 months ago 152 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2  2 years and 3 months ago 138 main
conda 145.4 MB | linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2  2 years and 4 months ago 2441 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2  2 years and 6 months ago 465 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2  2 years and 7 months ago 338 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2  2 years and 7 months ago 143 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2  2 years and 7 months ago 171 main
conda 145.1 MB | linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2  2 years and 7 months ago 183 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2  2 years and 7 months ago 158 main
conda 140.7 MB | noarch/clair3-0.1.10-hdfd78af_0.tar.bz2  2 years and 10 months ago 2155 main
conda 140.8 MB | noarch/clair3-0.1.9-hdfd78af_0.tar.bz2  2 years and 11 months ago 2219 main
conda 140.8 MB | noarch/clair3-0.1.8-hdfd78af_0.tar.bz2  3 years and 12 days ago 2324 main
conda 140.8 MB | noarch/clair3-0.1.7-hdfd78af_0.tar.bz2  3 years and 1 month ago 2420 main
conda 140.8 MB | noarch/clair3-0.1.6-hdfd78af_0.tar.bz2  3 years and 2 months ago 2544 main
conda 140.8 MB | noarch/clair3-0.1.5-hdfd78af_0.tar.bz2  3 years and 4 months ago 2527 main
conda 140.8 MB | noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2  3 years and 4 months ago 2408 main
conda 140.8 MB | noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2  3 years and 4 months ago 2333 main
conda 140.8 MB | noarch/clair3-0.1.4-hdfd78af_0.tar.bz2  3 years and 5 months ago 2368 main
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