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bioconda / packages / clair3

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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Filters

Type	Size	Name	Uploaded	Downloads	Labels
conda	208.5 MB	\| linux-64/clair3-1.1.0-py39hd649744_0.tar.bz2	13 days and 17 hours ago	132	main
conda	208.5 MB	\| linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2	1 month and 1 day ago	284	main
conda	208.5 MB	\| linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2	4 months and 2 days ago	946	main
conda	208.4 MB	\| linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2	8 months and 24 days ago	1408	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2	10 months and 9 days ago	393	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2	11 months and 12 days ago	1049	main
conda	208.4 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2	11 months and 21 days ago	212	main
conda	208.3 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2	11 months and 27 days ago	810	main
conda	208.2 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2	1 year and 13 days ago	298	main
conda	201.6 MB	\| linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2	1 year and 1 month ago	890	main
conda	201.5 MB	\| linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2	1 year and 4 months ago	1239	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2	1 year and 6 months ago	1401	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2	1 year and 7 months ago	459	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2	1 year and 9 months ago	306	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2	1 year and 9 months ago	128	main
conda	201.5 MB	\| linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2	1 year and 10 months ago	1615	main
conda	201.5 MB	\| linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2	1 year and 10 months ago	1617	main
conda	142.2 MB	\| linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2	1 year and 11 months ago	1642	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2	2 years and 1 month ago	1777	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2	2 years and 1 month ago	192	main
conda	142.2 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2	2 years and 6 months ago	2752	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2	2 years and 7 months ago	195	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2	2 years and 7 months ago	332	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2	2 years and 7 months ago	166	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2	2 years and 8 months ago	187	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2	2 years and 8 months ago	172	main
conda	145.4 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2	2 years and 9 months ago	2713	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2	2 years and 11 months ago	503	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2	3 years and 3 days ago	373	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2	3 years and 5 days ago	177	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2	3 years and 11 days ago	207	main
conda	145.1 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2	3 years and 15 days ago	220	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2	3 years and 18 days ago	194	main
conda	140.7 MB	\| noarch/clair3-0.1.10-hdfd78af_0.tar.bz2	3 years and 3 months ago	2349	main
conda	140.8 MB	\| noarch/clair3-0.1.9-hdfd78af_0.tar.bz2	3 years and 4 months ago	2484	main
conda	140.8 MB	\| noarch/clair3-0.1.8-hdfd78af_0.tar.bz2	3 years and 5 months ago	2588	main
conda	140.8 MB	\| noarch/clair3-0.1.7-hdfd78af_0.tar.bz2	3 years and 6 months ago	2682	main
conda	140.8 MB	\| noarch/clair3-0.1.6-hdfd78af_0.tar.bz2	3 years and 7 months ago	2807	main
conda	140.8 MB	\| noarch/clair3-0.1.5-hdfd78af_0.tar.bz2	3 years and 9 months ago	2791	main
conda	140.8 MB	\| noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2	3 years and 9 months ago	2670	main
conda	140.8 MB	\| noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2	3 years and 9 months ago	2597	main
conda	140.8 MB	\| noarch/clair3-0.1.4-hdfd78af_0.tar.bz2	3 years and 9 months ago	2633	main

bioconda / packages / clair3 0

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bioconda / packages / clair3

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