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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm9.masked

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r44hdfd78af_13.tar.bz2  5 months and 20 days ago 218 main
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 6 months ago 810 main
conda 9.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 11 months ago 396 main
conda 8.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 7 months ago 619 main
conda 9.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 9 months ago 245 main
conda 8.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 7 months ago 684 main
conda 8.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 16 days ago 324 main
conda 8.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 2 months ago 195 main
conda 7.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_5.tar.bz2  4 years and 7 months ago 201 main
conda 7.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_4.tar.bz2  5 years and 1 month ago 224 main
conda 7.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_3.tar.bz2  5 years and 7 months ago 252 main
conda 7.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_2.tar.bz2  5 years and 10 months ago 250 main
conda 6.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r351_0.tar.bz2  6 years and 6 months ago 301 main gcc7

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