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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm9.masked

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 15 days ago 239 main
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 824 main
conda 9.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 29 days ago 409 main
conda 8.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 633 main
conda 9.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 258 main
conda 8.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 697 main
conda 8.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 338 main
conda 8.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 209 main
conda 7.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 214 main
conda 7.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 237 main
conda 7.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 266 main
conda 7.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_2.tar.bz2  6 years and 1 day ago 264 main
conda 6.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r351_0.tar.bz2  6 years and 7 months ago 314 main gcc7

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