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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm9.masked

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r44hdfd78af_13.tar.bz2  7 months and 29 days ago 243 main
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 8 months ago 826 main
conda 9.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r43hdfd78af_11.tar.bz2  2 years and 1 month ago 411 main
conda 8.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 9 months ago 635 main
conda 9.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 11 months ago 261 main
conda 8.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 9 months ago 700 main
conda 8.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r41hdfd78af_7.tar.bz2  4 years and 2 months ago 341 main
conda 8.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40hdfd78af_6.tar.bz2  4 years and 4 months ago 212 main
conda 7.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 217 main
conda 7.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r40_4.tar.bz2  5 years and 3 months ago 240 main
conda 7.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_3.tar.bz2  5 years and 9 months ago 269 main
conda 7.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r36_2.tar.bz2  6 years and 15 days ago 267 main
conda 6.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm9.masked-1.3.99-r351_0.tar.bz2  6 years and 8 months ago 317 main gcc7

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