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r-biopipen.utils
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public |
Common utility R functions for biopipen processes.
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2025-07-29 |
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r-scplotter
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public |
provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
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2025-07-27 |
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r-plotthis
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public |
plotthis is an R package that is built upon ggplot2 and other plotting packages.
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2025-07-27 |
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bioconductor-ggmanh
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public |
Visualization Tool for GWAS Result
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2025-06-28 |
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r-ggrastr
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public |
Rasterize only specific layers of a ggplot2 plot (for instance, large scatter plots with many points) while keeping all labels and text in vector format. This allows users to keep plots within a reasonable size limit without losing the vector properties of scale-sensitive information.
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2025-06-27 |
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r-doubletfinder
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public |
DoubletFinder is an R package that predicts doublets in single-cell RNA sequencing data.
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2025-06-27 |
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r-enrichit
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public |
Gene Set Over-Representation Enrichment Analysis.
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2025-06-27 |
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r-bracer
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public |
Performs brace expansions on strings. Made popular by Unix shells, brace expansion allows users to concisely generate certain character vectors by taking a single string and (recursively) expanding the comma-separated lists and double-period-separated integer and character sequences enclosed within braces in that string. The double-period-separated numeric integer expansion also supports padding the resulting numbers with zeros.
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2025-06-27 |
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r-gglogger
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public |
Logs the calls used to create ggplot2 objects.
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2025-06-27 |
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r-tidyprompt
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public |
Create LLM prompting pipelines
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2025-04-25 |
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bioconductor-screpertoire
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public |
A toolkit for single-cell immune profiling
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2025-04-25 |
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r-aneuploidyscore
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public |
R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.
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2025-03-25 |
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bioconductor-data-packages
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public |
A package to enable downloading and installation of Bioconductor data packages
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2025-03-25 |
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bioconductor-gdsfmt
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public |
R Interface to CoreArray Genomic Data Structure (GDS) files
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2025-03-25 |
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bioconductor-seqarray
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public |
Data Management of Large-scale Whole-genome Sequence Variant Calls
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2025-03-25 |
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r-sccatch
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public |
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data.
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2025-03-25 |
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r-seuratdata
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public |
SeuratData is a mechanism for distributing datasets in the form of Seurat objects
using R's internal package and data management systems.
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2025-03-25 |
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r-harmony
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public |
Fast, sensitive and accurate integration of single-cell data with Harmony
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2025-03-25 |
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r-igraph
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public |
R package of the igraph network analysis library.
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2025-03-25 |
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r-seurat
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public |
R toolkit for single cell genomics
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2025-03-25 |
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r-presto
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public |
Fast Wilcoxon and auROC.
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2025-03-25 |
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r-slugify
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public |
Slugify strings in R
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2025-03-25 |
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r-hitype
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public |
Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.
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2025-03-25 |
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r-seuratdisk
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public |
Support for multi-modal single cell through h5Seurat and AnnData for Seurat
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2025-03-25 |
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r-seuratwrappers
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public |
SeuratWrappers is a collection of community-provided methods and extensions for Seurat, curated by the Satija Lab at NYGC. These methods comprise functionality not presently found in Seurat, and are able to be updated much more frequently.
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2025-03-25 |
