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r-scplotter
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public |
provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
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2024-12-24 |
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r-biopipen.utils
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public |
Common utility R functions for biopipen processes.
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2024-12-24 |
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r-plotthis
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public |
plotthis is an R package that is built upon ggplot2 and other plotting packages.
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2024-11-18 |
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bioconductor-screpertoire
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public |
A toolkit for single-cell immune profiling
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2024-11-05 |
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r-gglogger
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public |
Logs the calls used to create ggplot2 objects.
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2024-10-24 |
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r-aneuploidyscore
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public |
R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.
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2024-07-10 |
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bioconductor-data-packages
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public |
A package to enable downloading and installation of Bioconductor data packages
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2024-07-09 |
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r-harmony
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public |
Fast, sensitive and accurate integration of single-cell data with Harmony
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2024-07-09 |
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r-ggradar
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public |
This package exports the functionality of ggplot2 to create radar charts.
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2024-07-09 |
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r-gsea_r
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public |
Copyright © 2003-2019 The Broad Institute, Inc., Massachusetts Institute of Technology and Regents of the University of California. All rights reserved.
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2024-07-09 |
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r-hitype
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public |
Hierarchical and high-resolution cell-type identification for single-cell RNA-seq data based on ScType.
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2024-07-09 |
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r-seuratwrappers
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public |
SeuratWrappers is a collection of community-provided methods and extensions for Seurat, curated by the Satija Lab at NYGC. These methods comprise functionality not presently found in Seurat, and are able to be updated much more frequently.
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2024-07-09 |
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r-seuratdata
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public |
SeuratData is a mechanism for distributing datasets in the form of Seurat objects
using R's internal package and data management systems.
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2024-07-09 |
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r-sccatch
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public |
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data.
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2024-07-09 |
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r-bracer
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public |
Performs brace expansions on strings. Made popular by Unix shells, brace expansion allows users to concisely generate certain character vectors by taking a single string and (recursively) expanding the comma-separated lists and double-period-separated integer and character sequences enclosed within braces in that string. The double-period-separated numeric integer expansion also supports padding the resulting numbers with zeros.
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2024-07-09 |
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r-doubletfinder
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public |
DoubletFinder is an R package that predicts doublets in single-cell RNA sequencing data.
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2024-07-09 |
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bioconductor-gdsfmt
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public |
R Interface to CoreArray Genomic Data Structure (GDS) files
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2024-06-18 |
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bioconductor-seqarray
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public |
Data Management of Large-scale Whole-genome Sequence Variant Calls
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2024-06-18 |
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bioconductor-ggmanh
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public |
Visualization Tool for GWAS Result
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2024-06-17 |
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r-igraph
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public |
R package of the igraph network analysis library.
|
2023-12-27 |
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r-seurat
|
public |
R toolkit for single cell genomics
|
2023-12-23 |
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r-presto
|
public |
Fast Wilcoxon and auROC.
|
2023-12-17 |
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r-slugify
|
public |
Slugify strings in R
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2023-10-09 |
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r-fastrpca
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public |
Implementation of randomized PCA using Intel MKL.
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2023-06-18 |
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r-ttservice
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public |
It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by 'tidySingleCellExperiment' and 'tidyseurat'. The implemented method is join_features().
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2023-06-18 |
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r-rvenn
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public |
Set operations for many sets. The base functions for set operations in R can be used for only two sets. This package uses 'purr' to find the union, intersection and difference of three or more sets. This package also provides functions for pairwise set operations among several sets. Further, based on 'ggplot2' and 'ggforce', a Venn diagram can be drawn for two or three sets. For bigger data sets, a clustered heatmap showing presence/absence of the elements of the sets can be drawn based on the 'pheatmap' package. Finally, enrichment test can be applied to two sets whether an overlap is statistically significant or not.
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2023-06-18 |
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jvarkit
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public |
Java utilities for Bioinformatics
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2023-06-16 |
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cnvnator
|
public |
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
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2023-06-16 |
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root
|
public |
A modular scientific software framework.
|
2023-06-16 |
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virmid
|
public |
No Summary
|
2023-06-16 |
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jvarkit-downsamplevcf
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public |
No Summary
|
2023-06-16 |
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bwtool
|
public |
No Summary
|
2023-06-16 |
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libbeato
|
public |
No Summary
|
2023-06-16 |
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calcroicovg
|
public |
No Summary
|
2023-06-16 |
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genomemusic2
|
public |
No Summary
|
2023-06-16 |
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joinx
|
public |
No Summary
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2023-06-16 |
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mutsig
|
public |
No Summary
|
2023-06-16 |
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bamstats
|
public |
An interactive desktop GUI tool for summarising Next Generation Sequencing alignments
|
2023-06-16 |
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libxkbfile
|
public |
No Summary
|
2023-06-16 |
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r-admm
|
public |
No Summary
|
2023-06-16 |
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linasm
|
public |
No Summary
|
2023-06-16 |
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r-rcppziggurat
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public |
No Summary
|
2023-06-16 |
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r-rcpparmadillo
|
public |
No Summary
|
2023-06-16 |
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r-rfast
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public |
No Summary
|
2023-06-16 |
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doctoc
|
public |
Generates table of contents for markdown files inside local git repository. Links are compatible with anchors generated by github or other sites.
|
2023-06-16 |
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gdc-client
|
public |
GDC Data Transfer Tool
|
2023-06-16 |
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bioconductor-snpchip
|
public |
Visualizations for copy number alterations
|
2023-06-16 |
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bioconductor-oligoclasses
|
public |
Classes for high-throughput arrays supported by oligo and crlmm
|
2023-06-16 |
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parcel
|
public |
A high performance HTTP download client that leverages the speed of UDP without sacrificing reliability.
|
2023-06-16 |
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bioconductor-crlmm
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public |
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
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2023-06-16 |
