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pwwang / packages / r-seuratdisk 0.0.9020

Support for multi-modal single cell through h5Seurat and AnnData for Seurat

Installers

  • linux-64 v0.0.9020

conda install

To install this package run one of the following:
conda install pwwang::r-seuratdisk

Description

The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.


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