Package Name | Access | Summary | Updated |
---|---|---|---|
deeploc2 | public | A placeholder library to install DeepLoc. | 2025-03-25 |
tmbed | public | TMbed predicts transmembrane beta barrel and alpha helical proteins, the position and orientation of their transmembrane segments, and signal peptides. | 2025-03-25 |
bio | public | command-line utilities to make bioinformatics explorations more enjoyable. | 2025-03-25 |
deepredeff-py | public | A python port of the R deepredeff pipeline. | 2025-03-25 |
r-deepredeff | public | A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) <doi:10.1101/2020.07.08.193250>. | 2025-03-25 |
signalp6 | public | a placeholder library to install signalp versions 6. | 2025-03-25 |
effectorp3 | public | Improved prediction of fungal effector proteins from secretomes with EffectorP 3.0 | 2025-03-25 |
deepsig | public | No Summary | 2025-03-25 |
lasagne | public | A lightweight library to build and train neural networks in Theano | 2025-03-25 |
deeploc | public | No Summary | 2025-03-25 |
localizer | public | No Summary | 2025-03-25 |
signalp3 | public | No Summary | 2025-03-25 |
signalp5 | public | No Summary | 2025-03-25 |
effectorp1 | public | No Summary | 2025-03-25 |
phobius | public | No Summary | 2025-03-25 |
effectorp2 | public | No Summary | 2025-03-25 |
apoplastp | public | No Summary | 2025-03-25 |
targetp2 | public | No Summary | 2025-03-25 |
signalp4 | public | No Summary | 2025-03-25 |
tmhmm | public | No Summary | 2025-03-25 |
predectorutils | public | Utilities to run the predector pipeline. | 2025-03-25 |
ffindex | public | No Summary | 2025-03-25 |