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predectorutils
|
public |
Utilities to run the predector pipeline.
|
2024-08-30 |
|
tmbed
|
public |
TMbed predicts transmembrane beta barrel and alpha helical proteins, the position and orientation of their transmembrane segments, and signal peptides.
|
2024-08-27 |
|
signalp6
|
public |
a placeholder library to install signalp versions 6.
|
2024-08-27 |
|
deeploc2
|
public |
A placeholder library to install DeepLoc.
|
2024-08-27 |
|
bio
|
public |
command-line utilities to make bioinformatics explorations more enjoyable.
|
2024-08-27 |
|
phobius
|
public |
No Summary
|
2024-08-27 |
|
deepredeff-py
|
public |
A python port of the R deepredeff pipeline.
|
2023-06-18 |
|
r-deepredeff
|
public |
A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) <doi:10.1101/2020.07.08.193250>.
|
2023-06-16 |
|
effectorp3
|
public |
Improved prediction of fungal effector proteins from secretomes with EffectorP 3.0
|
2023-06-16 |
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deepsig
|
public |
No Summary
|
2023-06-16 |
|
lasagne
|
public |
A lightweight library to build and train neural networks in Theano
|
2023-06-16 |
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deeploc
|
public |
No Summary
|
2023-06-16 |
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localizer
|
public |
No Summary
|
2023-06-16 |
|
signalp3
|
public |
No Summary
|
2023-06-16 |
|
effectorp1
|
public |
No Summary
|
2023-06-16 |
|
effectorp2
|
public |
No Summary
|
2023-06-16 |
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apoplastp
|
public |
No Summary
|
2023-06-16 |
|
signalp4
|
public |
No Summary
|
2023-06-16 |
|
tmhmm
|
public |
No Summary
|
2023-06-16 |
|
ffindex
|
public |
No Summary
|
2023-06-16 |
|
targetp2
|
public |
No Summary
|
2023-05-31 |
|
signalp5
|
public |
No Summary
|
2023-05-31 |
