| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fasttree | public | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences | 2025-03-25 |
| phyml | public | Phylogenetic estimation using (Maximum) Likelihood | 2025-03-25 |
| umi_tools | public | Tools for dealing with Unique Molecular Identifiers (UMIs) / Random Molecular Tags (RMTs) | 2025-03-25 |
| amas | public | Calculate various summary statistics on a multiple sequence alignment | 2025-03-25 |
| raxml-ng | public | RAxML Next Generation: faster, easier-to-use and more flexible | 2025-03-25 |
| rust | public | Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. This package provides the compiler (rustc) and the documentation utilities rustdoc. | 2025-03-25 |
| tectonic | public | A modernized, complete, standalone TeX/LaTeX engine. | 2025-03-25 |
| biopython | public | Freely available tools for computational molecular biology. | 2025-03-25 |
| bioconductor-ggtree | public | an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data | 2025-03-25 |
| htmlmin | public | An HTML Minifier | 2025-03-25 |
| sierralocal | public | Local execution of HIVdb algorithm | 2025-03-25 |
| dendropy | public | A Python library for phylogenetics and phylogenetic computing | 2025-03-25 |
| tn93 | public | fast pairwise Tamura Nei 93 distance calculator | 2025-03-25 |
| hivtrace | public | Reconstruction and analysis of HIV-1 molecular transmission networks | 2025-03-25 |
| hivclustering | public | A Python 3 library that makes inferences on HIV-1 transmission networks | 2025-03-25 |
| bioext | public | A few handy bioinformatics tools not already within BioPython | 2025-03-25 |
| hyphy-helper | public | An intuitive HyPhy interface for Python | 2025-03-25 |
| hyphy-python | public | HyPhy package interface library | 2025-03-25 |
| fakemp | public | Fake multiprocessing pool objects | 2025-03-25 |
| python-levenshtein | public | Python extension for computing string edit distances and similarities | 2025-03-25 |
| fuzzywuzzy | public | Fuzzy string matching in python | 2025-03-25 |
| sierrapy | public | A Client of HIVdb Sierra GraphQL Webservice | 2025-03-25 |
| gql | public | GraphQL client for Python | 2025-03-25 |
| graphql-core | public | GraphQL implementation for Python | 2025-03-25 |
| promise | public | Promises/A+ implementation for Python | 2025-03-25 |
