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fasttree
|
public |
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
|
2025-03-25 |
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phyml
|
public |
Phylogenetic estimation using (Maximum) Likelihood
|
2025-03-25 |
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umi_tools
|
public |
Tools for dealing with Unique Molecular Identifiers (UMIs) / Random Molecular Tags (RMTs)
|
2025-03-25 |
|
amas
|
public |
Calculate various summary statistics on a multiple sequence alignment
|
2025-03-25 |
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raxml-ng
|
public |
RAxML Next Generation: faster, easier-to-use and more flexible
|
2025-03-25 |
|
rust
|
public |
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
This package provides the compiler (rustc) and the documentation utilities rustdoc.
|
2025-03-25 |
|
tectonic
|
public |
A modernized, complete, standalone TeX/LaTeX engine.
|
2025-03-25 |
|
biopython
|
public |
Freely available tools for computational molecular biology.
|
2025-03-25 |
|
bioconductor-ggtree
|
public |
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
|
2025-03-25 |
|
htmlmin
|
public |
An HTML Minifier
|
2025-03-25 |
|
sierralocal
|
public |
Local execution of HIVdb algorithm
|
2025-03-25 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing
|
2025-03-25 |
|
tn93
|
public |
fast pairwise Tamura Nei 93 distance calculator
|
2025-03-25 |
|
hivtrace
|
public |
Reconstruction and analysis of HIV-1 molecular transmission networks
|
2025-03-25 |
|
hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks
|
2025-03-25 |
|
bioext
|
public |
A few handy bioinformatics tools not already within BioPython
|
2025-03-25 |
|
hyphy-helper
|
public |
An intuitive HyPhy interface for Python
|
2025-03-25 |
|
hyphy-python
|
public |
HyPhy package interface library
|
2025-03-25 |
|
fakemp
|
public |
Fake multiprocessing pool objects
|
2025-03-25 |
|
python-levenshtein
|
public |
Python extension for computing string edit distances and similarities
|
2025-03-25 |
|
fuzzywuzzy
|
public |
Fuzzy string matching in python
|
2025-03-25 |
|
sierrapy
|
public |
A Client of HIVdb Sierra GraphQL Webservice
|
2025-03-25 |
|
gql
|
public |
GraphQL client for Python
|
2025-03-25 |
|
graphql-core
|
public |
GraphQL implementation for Python
|
2025-03-25 |
|
promise
|
public |
Promises/A+ implementation for Python
|
2025-03-25 |
