kantorlab
by kantorlab (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| amas | 0.98 | Calculate various summary statistics on a multiple sequence alignment | Mar 25, 2025 | GNU General Public v3 (GPLv3) |
| ampliconclipper | 0.0 | An alignment postprocessor that removes PCR primers from SAM alignments and discards reads with major errors | Mar 25, 2025 | GPLv3 |
| bambamc | 0.0.50 | lightweight C implementation of name collating BAM file input and BAM file output | Mar 25, 2025 | GPLv3 |
| bioconductor-ggtree | 3.10 | an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data | Mar 25, 2025 | Artistic-2.0 |
| bioext | 0.19.4 | A few handy bioinformatics tools not already within BioPython | Mar 25, 2025 | GPLv3 |
| biopython | 1.73 | Freely available tools for computational molecular biology. | Mar 25, 2025 | Other |
| blastdb | 2.7.1 | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit | Mar 25, 2025 | Public Domain |
| blastn | 2.7.1 | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit | Mar 25, 2025 | Public Domain |
| bowtie2 | 2.3.5.1 | Fast and sensitive read alignment | Mar 25, 2025 | GPLv3 |
| dendropy | 4.4.0 | A Python library for phylogenetics and phylogenetic computing | Mar 25, 2025 | BSD License |
| fakemp | 0.9.1 | Fake multiprocessing pool objects | Mar 25, 2025 | GNU GPL version 3 |
| fastaq | 3.15.0 | Python3 scripts to manipulate FASTA and FASTQ files | Mar 25, 2025 | GPLv3 |
| fasttree | 2.1.10 | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences | Mar 25, 2025 | GPL v2 |
| fastx_toolkit | 0.0.14 | FASTA/FASTQ pre-processing programs | Mar 25, 2025 | AGPL |
| fuzzywuzzy | 0.16.0 | Fuzzy string matching in python | Mar 25, 2025 | GPL |
| gql | 0.1.0 | GraphQL client for Python | Mar 25, 2025 | MIT License |
| graphql-core | 2.1 | GraphQL implementation for Python | Mar 25, 2025 | MIT License |
| hivclustering | 1.2.8 | A Python 3 library that makes inferences on HIV-1 transmission networks | Mar 25, 2025 | MIT |
| hivmmer | 0.2.1 | An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER. | Mar 25, 2025 | BSD-like |
| hivtrace | 0.4.4 | Reconstruction and analysis of HIV-1 molecular transmission networks | Mar 25, 2025 | MIT |
| hmmer | 3.2.1 | Biosequence analysis using profile hidden Markov models | Mar 25, 2025 | GPLv3 |
| htmlmin | 0.1.12 | An HTML Minifier | Mar 25, 2025 | BSD License |
| hyphy-helper | 0.9.9 | An intuitive HyPhy interface for Python | Mar 25, 2025 | GNU GPL version 3 |
| hyphy-python | 0.1.9 | HyPhy package interface library | Mar 25, 2025 | MIT |
| iqtree | 2.0.4 | Efficient phylogenomic software by maximum likelihood | Mar 25, 2025 | GPLv2 |