kantorlab
by kantorlab (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| blastdb | 2.7.1 | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit | Mar 25, 2025 | Public Domain |
| blastn | 2.7.1 | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit | Mar 25, 2025 | Public Domain |
| sra-tools | 2.9.1.1 | The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. | Mar 25, 2025 | Public Domain |
| hmmer | 3.2.1 | Biosequence analysis using profile hidden Markov models | Mar 25, 2025 | GPLv3 |
| hivmmer | 0.2.1 | An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER. | Mar 25, 2025 | BSD-like |
| pear | 0.9.11 | PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger | Mar 25, 2025 | CC-BY-NC-SA-3.0 |
| iqtree | 2.0.4 | Efficient phylogenomic software by maximum likelihood | Mar 25, 2025 | GPLv2 |
| samtools | 1.3.1 | Tools for dealing with SAM, BAM and CRAM files | Mar 25, 2025 | MIT |
| pysam | 0.14.1 | Python module for reading and manipulating SAM/BAM/VCF/BCF files | Mar 25, 2025 | MIT |
| biopython | 1.73 | Freely available tools for computational molecular biology. | Mar 25, 2025 | Other |
| picard | 2.13.2 | Java tools for working with NGS data in the BAM format | Mar 25, 2025 | MIT |
| bowtie2 | 2.3.5.1 | Fast and sensitive read alignment | Mar 25, 2025 | GPLv3 |
| bioconductor-ggtree | 3.10 | an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data | Mar 25, 2025 | Artistic-2.0 |
| fastx_toolkit | 0.0.14 | FASTA/FASTQ pre-processing programs | Mar 25, 2025 | AGPL |
| libgtextutils | 0.7 | Gordon's Text utils Library | Mar 25, 2025 | AGPL |
| hivtrace | 0.4.4 | Reconstruction and analysis of HIV-1 molecular transmission networks | Mar 25, 2025 | MIT |
| tectonic | 0.1.11 | A modernized, complete, standalone TeX/LaTeX engine. | Mar 25, 2025 | MIT |
| phyml | 3.3.20200621 | Phylogenetic estimation using (Maximum) Likelihood | Mar 25, 2025 | GPL-3.0-only |
| gql | 0.1.0 | GraphQL client for Python | Mar 25, 2025 | MIT License |
| dendropy | 4.4.0 | A Python library for phylogenetics and phylogenetic computing | Mar 25, 2025 | BSD License |
| sierralocal | 0.1.2 | Local execution of HIVdb algorithm | Mar 25, 2025 | GNU General Public License v3 (GPLv3) |
| mafft | 7.313 | Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform | Mar 25, 2025 | BSD |
| rx | 1.6.1 | Reactive Extensions (Rx) for Python | Mar 25, 2025 | Apache Software License |
| trimmomatic | 0.36 | A flexible read trimming tool for Illumina NGS data | Mar 25, 2025 | GPLv3 |
| fakemp | 0.9.1 | Fake multiprocessing pool objects | Mar 25, 2025 | GNU GPL version 3 |