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voluptuous
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public |
Voluptuous is a Python data validation library
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2025-03-25 |
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rx
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public |
Reactive Extensions (Rx) for Python
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2025-03-25 |
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syn-scan
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public |
Synonymous Nonsynonymous Mutation Rates between Sequences Containing Ambiguous Nucleotides
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2025-03-25 |
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iqtree
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public |
Efficient phylogenomic software by maximum likelihood
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2025-03-25 |
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raxml
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public |
Randomized Axelerated Maximum Likelihood
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2025-03-25 |
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sra-tools
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public |
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
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2025-03-25 |
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ncbi-ngs-sdk
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public |
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
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2025-03-25 |
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matplotlib
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public |
Publication quality figures in Python
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2025-03-25 |
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mafft
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public |
Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
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2025-03-25 |
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blastn
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public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit
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2025-03-25 |
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blastdb
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public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit
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2025-03-25 |
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quasitools
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public |
Quasitools is a collection of tools for analysing Viral Quasispecies
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2025-03-25 |
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iva
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public |
de novo virus assembler of Illumina paired reads
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2025-03-25 |
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pysam
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public |
Python module for reading and manipulating SAM/BAM/VCF/BCF files
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2025-03-25 |
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fastaq
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public |
Python3 scripts to manipulate FASTA and FASTQ files
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2025-03-25 |
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bowtie2
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public |
Fast and sensitive read alignment
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2025-03-25 |
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samtools
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public |
Tools for dealing with SAM, BAM and CRAM files
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2025-03-25 |
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trimmomatic
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public |
A flexible read trimming tool for Illumina NGS data
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2025-03-25 |
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smalt
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public |
SMALT aligns DNA sequencing reads with a reference genome.
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2025-03-25 |
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bambamc
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public |
lightweight C implementation of name collating BAM file input and BAM file output
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2025-03-25 |
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mummer
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public |
MUMmer is a system for rapidly aligning entire genomes
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2025-03-25 |
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kmc
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public |
Fast and frugal disk based k-mer counter
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2025-03-25 |
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hivmmer
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public |
An alignment and variant-calling pipeline for Illumina deep sequencing of HIV-1, based on the probabilistic aligner HMMER.
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2025-03-25 |
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pear
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public |
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger
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2025-03-25 |
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hmmer
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public |
Biosequence analysis using profile hidden Markov models
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2025-03-25 |
